| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1501 |
|---|
| Symbol | |
|---|
| ID | 4277456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1790515 |
|---|
| End bp | 1791753 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638134281 |
|---|
| Product | beta-ketoacyl synthase |
|---|
| Protein accession | YP_750190 |
|---|
| Protein GI | 114562677 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | [TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000623418 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAC GTCGTGTCGT CATCACAGGT CTTGGCCTAG TGACTCCTGT GGGTAATGAT
GTCGAGTCTA CTTGGAATGC CTTATTGGCA GGTAAGAGTG GTATTGCTCC AATCACTAAG
TTTGATGCTA GTGAATTTGG TACTCGTTTC AGTGGCTCTG TGAAAGATTT TGATGTCGAA
CAATACCTAA CCAAAAAAGA TGCTCGTAAA ATGGATTTAT TTATCCAATA CGGCATGGCT
GCAGGCATTC AAGCAGTAAA AGATTCAGGC TTAGATATGA GCCAAGAAAA CCCAGCTCGT
ATAGGTACCG CTATTGGTGC TGGTATGGGG GGTATGTGGT TAATTGAACA AGGCCATTCT
GCATTATTAA ATGGTGGACC ACGTAAAGTG TCACCATTTT TTGTGCCAAG CACTATTATC
AATATGATTG CCGGACACTT GTCGATTATG TATGGCATGA CAGGTCCTAA CTTTGCCGTG
ACTACAGCCT GCACTACAGG TGTTCACAAT ATTGGTTTTG CTGCACGTAC CATTGCTTAT
GGTGATGCTG ATGTGATGGT GGCCGGTGGC GCAGAAGATG TGACTAGCCC ATTAGGCGTA
GCAGGTTTTA GTGCCGCTAA AGCATTATCT ACTCGTAATG ACGATCCAAC AGCAGCAAGC
CGTCCTTGGG ACAAAGACCG TGATGGTTTT GTTATTGGCG ATGGCGCGGG TGTGATTGTG
ATGGAAGAGT ACGAGCGCGC TAAAGCGCGT GGTGCAAAAA TTTACGGTGA GTTAGTCGGT
TTTGGCATGA GTGGTGATGC ATTCCACATG ACATCACCAC CAAGTGATGG TGCAGGCGCT
GCGGCTGCAA TGGTCAATGC CATTAATGAT GCACAGATCC AAAAAGAACA AGTGGGTTAC
ATTAATGCTC ATGGCACTTC AACCAATGCA GGCGATAAAG CTGAAGCTGC CGCGGTTAAA
TCGGTATTTG GACCACATGC TTATGATGTA TTGGTGAGTT CGACTAAATC CATGACCGGA
CATTTATTAG GTGCAGCAGG CGCTGTTGAA GCCATTATTA CTTTGCTTGC ACTGCGTGAC
CAACACGTAC CGCCAACAAT CAACTTAGAT AATCCAGATG AAGGATGCGA TTTAGATTTT
GTTGCCCACA CTTCACGTCG ACATCAGTTT GACTATGCCT TATGTAATTC ATTTGGCTTT
GGTGGCACAA ACGGTTCGTT ACTGTTTAAG AAAATTTAA
|
|---|
| Protein sequence | MSKRRVVITG LGLVTPVGND VESTWNALLA GKSGIAPITK FDASEFGTRF SGSVKDFDVE
QYLTKKDARK MDLFIQYGMA AGIQAVKDSG LDMSQENPAR IGTAIGAGMG GMWLIEQGHS
ALLNGGPRKV SPFFVPSTII NMIAGHLSIM YGMTGPNFAV TTACTTGVHN IGFAARTIAY
GDADVMVAGG AEDVTSPLGV AGFSAAKALS TRNDDPTAAS RPWDKDRDGF VIGDGAGVIV
MEEYERAKAR GAKIYGELVG FGMSGDAFHM TSPPSDGAGA AAAMVNAIND AQIQKEQVGY
INAHGTSTNA GDKAEAAAVK SVFGPHAYDV LVSSTKSMTG HLLGAAGAVE AIITLLALRD
QHVPPTINLD NPDEGCDLDF VAHTSRRHQF DYALCNSFGF GGTNGSLLFK KI
|
|---|
| |