Gene Sfri_1501 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1501 
Symbol 
ID4277456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1790515 
End bp1791753 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content45% 
IMG OID638134281 
Productbeta-ketoacyl synthase 
Protein accessionYP_750190 
Protein GI114562677 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism
[I] Lipid transport and metabolism 
COG ID[COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase 
TIGRFAM ID[TIGR03150] beta-ketoacyl-acyl-carrier-protein synthase II 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value6.23418e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTAAAC GTCGTGTCGT CATCACAGGT CTTGGCCTAG TGACTCCTGT GGGTAATGAT 
GTCGAGTCTA CTTGGAATGC CTTATTGGCA GGTAAGAGTG GTATTGCTCC AATCACTAAG
TTTGATGCTA GTGAATTTGG TACTCGTTTC AGTGGCTCTG TGAAAGATTT TGATGTCGAA
CAATACCTAA CCAAAAAAGA TGCTCGTAAA ATGGATTTAT TTATCCAATA CGGCATGGCT
GCAGGCATTC AAGCAGTAAA AGATTCAGGC TTAGATATGA GCCAAGAAAA CCCAGCTCGT
ATAGGTACCG CTATTGGTGC TGGTATGGGG GGTATGTGGT TAATTGAACA AGGCCATTCT
GCATTATTAA ATGGTGGACC ACGTAAAGTG TCACCATTTT TTGTGCCAAG CACTATTATC
AATATGATTG CCGGACACTT GTCGATTATG TATGGCATGA CAGGTCCTAA CTTTGCCGTG
ACTACAGCCT GCACTACAGG TGTTCACAAT ATTGGTTTTG CTGCACGTAC CATTGCTTAT
GGTGATGCTG ATGTGATGGT GGCCGGTGGC GCAGAAGATG TGACTAGCCC ATTAGGCGTA
GCAGGTTTTA GTGCCGCTAA AGCATTATCT ACTCGTAATG ACGATCCAAC AGCAGCAAGC
CGTCCTTGGG ACAAAGACCG TGATGGTTTT GTTATTGGCG ATGGCGCGGG TGTGATTGTG
ATGGAAGAGT ACGAGCGCGC TAAAGCGCGT GGTGCAAAAA TTTACGGTGA GTTAGTCGGT
TTTGGCATGA GTGGTGATGC ATTCCACATG ACATCACCAC CAAGTGATGG TGCAGGCGCT
GCGGCTGCAA TGGTCAATGC CATTAATGAT GCACAGATCC AAAAAGAACA AGTGGGTTAC
ATTAATGCTC ATGGCACTTC AACCAATGCA GGCGATAAAG CTGAAGCTGC CGCGGTTAAA
TCGGTATTTG GACCACATGC TTATGATGTA TTGGTGAGTT CGACTAAATC CATGACCGGA
CATTTATTAG GTGCAGCAGG CGCTGTTGAA GCCATTATTA CTTTGCTTGC ACTGCGTGAC
CAACACGTAC CGCCAACAAT CAACTTAGAT AATCCAGATG AAGGATGCGA TTTAGATTTT
GTTGCCCACA CTTCACGTCG ACATCAGTTT GACTATGCCT TATGTAATTC ATTTGGCTTT
GGTGGCACAA ACGGTTCGTT ACTGTTTAAG AAAATTTAA
 
Protein sequence
MSKRRVVITG LGLVTPVGND VESTWNALLA GKSGIAPITK FDASEFGTRF SGSVKDFDVE 
QYLTKKDARK MDLFIQYGMA AGIQAVKDSG LDMSQENPAR IGTAIGAGMG GMWLIEQGHS
ALLNGGPRKV SPFFVPSTII NMIAGHLSIM YGMTGPNFAV TTACTTGVHN IGFAARTIAY
GDADVMVAGG AEDVTSPLGV AGFSAAKALS TRNDDPTAAS RPWDKDRDGF VIGDGAGVIV
MEEYERAKAR GAKIYGELVG FGMSGDAFHM TSPPSDGAGA AAAMVNAIND AQIQKEQVGY
INAHGTSTNA GDKAEAAAVK SVFGPHAYDV LVSSTKSMTG HLLGAAGAVE AIITLLALRD
QHVPPTINLD NPDEGCDLDF VAHTSRRHQF DYALCNSFGF GGTNGSLLFK KI