Gene Sfri_1485 details

Gene Information

• Locus tag: Sfri_1485
• ID: 4278052
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 1773935
• End bp: 1774420
• Gene Length: 486 bp
• Protein Length: 161 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 638134266
• Product: protein tyrosine phosphatase
• Protein accession: YP_750175
• Protein GI: 114562662
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG0394] Protein-tyrosine-phosphatase

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCGATG ATAAATATCT TTTAAATGTT CGCTCGGTGT TGTTTGTCTG TATGGGTAAT 
ATTTGCCGCT CGCCGACGGC AGAGGCAGTG TTTAGGCAAC AAATGAAACG TCACTCGCTT 
CAACTCGACA TCGATTCTGC AGGGACTATT GCCTATCATC AAGGGCATGC TCCGGACAGT 
CGCAGTATTA TTGCTGGCAA CAAGCGCGGA CTTGATTTTT CAGGTATGAA AGCTCGGCAG 
GTTATCGACG CTGACTTTGA ACGATTCGAT TTAATTTTAG CGGCAGACTT TGCCAATTTA 
AATGATTTGA AAGACAGGTG TCCTGCCCAT TTACGATATA AATTACAGTT GATATTAAGC 
TATGGTGATT CGTTAGTCGA AGAAGTACCT GACCCATATT ATGGTGGTGA AAGAGGATTT 
GAGATGGTTA TCAATTTACT TGAAGCCAGT TTAGCTGCAT TGGCGATTAA ACTAGCTAAT 
CGTTGA 

 

Protein sequence

MIDDKYLLNV RSVLFVCMGN ICRSPTAEAV FRQQMKRHSL QLDIDSAGTI AYHQGHAPDS 
RSIIAGNKRG LDFSGMKARQ VIDADFERFD LILAADFANL NDLKDRCPAH LRYKLQLILS 
YGDSLVEEVP DPYYGGERGF EMVINLLEAS LAALAIKLAN R