Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1484 |
Symbol | |
ID | 4278051 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1772930 |
End bp | 1773778 |
Gene Length | 849 bp |
Protein Length | 282 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638134265 |
Product | DNA ligase |
Protein accession | YP_750174 |
Protein GI | 114562661 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1793] ATP-dependent DNA ligase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.159526 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTAAGC TACCGTATCT TTTTATTTTG GTCATTATTT CACTGCATTG TTTTACGATA AAGAGTGAAG TGTTATCAAT ACCTCCTATT CAGTTGGCAA CAAAATATCA ACAAGATATA GATGTCACTG AATACTTAGT CAGCGAGAAG CTTGATGGTG TTCGAGGCTA CTGGGATGGC AGTAACATGC TGACTCGCAG TGGACGAAAA GTGGCATTAC CTTCATCGTT TACACTGGGT TTTCCTCATA CAGCTATTGA CGGTGAACTT TGGTTGGGGC GTAATCGATT CGAAGATATT TCAGCATTGG TTCGACGCAA GCAAGTACCC GATAAAGAGT GGCAGGAAGT TAAGTTTATG ATGTTTGATT TACCGCGGCA TTCAGGCCCT TTTATTGAAC GCTACTTAGC GATGAAAATG TTGGCAGAAC AAACGGCCTC CATACATTTA CAGGTCATTA AGCAGGAGCC GGTGGCTTCA ACTGAAGCTC TGTTTACATT GCTTGATTCC ATCGTTAATG CTGGTGGTGA AGGATTGATG TTACATTATC AGCAAGCGCA TTATGCAGTC GGCCGCAGTG AGTATATTGT TAAGCTCAAA CCCAAATATG ACGCTGAAGC TGTAGTGATT GGTCATACAG AAGGTAAGGG TAAGTATCGA GGTAAACTAG GTGCGTTAAT TGTAAAAACA CCTGCGGGGG TAGTGTTTAA TATCGGCAGT GGTTTAAGCG ATAAACAACG AGAAAATCCA CCTTTAGTCG GTTCTACCAT TACTTATCAA TATTTAGGCT TAACTCAAAA AGGGACGCCA AGATTTGCTA CTTTTCTGCG ACAAAGACCA CCGCAATAA
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Protein sequence | MRKLPYLFIL VIISLHCFTI KSEVLSIPPI QLATKYQQDI DVTEYLVSEK LDGVRGYWDG SNMLTRSGRK VALPSSFTLG FPHTAIDGEL WLGRNRFEDI SALVRRKQVP DKEWQEVKFM MFDLPRHSGP FIERYLAMKM LAEQTASIHL QVIKQEPVAS TEALFTLLDS IVNAGGEGLM LHYQQAHYAV GRSEYIVKLK PKYDAEAVVI GHTEGKGKYR GKLGALIVKT PAGVVFNIGS GLSDKQRENP PLVGSTITYQ YLGLTQKGTP RFATFLRQRP PQ
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