Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1460 |
Symbol | |
ID | 4278464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1744648 |
End bp | 1745076 |
Gene Length | 429 bp |
Protein Length | 142 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638134235 |
Product | biopolymer transport protein ExbD/TolR |
Protein accession | YP_750150 |
Protein GI | 114562637 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0848] Biopolymer transport protein |
TIGRFAM ID | [TIGR02801] TolR protein |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00381179 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATCAGC GTAAACGTCG TCGTCCAGTT GCAGAAATCA ACGTTGTACC TTACATCGAC GTGATGTTGG TGTTGTTGAT TATTTTTATG GTGACAGCGC CTATTGTATC GCAAGGAGTC AAAGTAGAAT TACCTCAAGG TAATGCCGAG TCTTTACCAC CTGATAGTAA GCCTCCTATC GTTGCATCGA TTGACGCGGC TGGACAATAT TTCTTGAATA TCGGCAGTAG TTCTAACTCT GAAGTTATGG ACTTAGAACA AGTGTCGACT GAAGTTGGAG CGTTAATCCA GCTTGAACCG TTAAGGCCTG TGGTAGTAAA AGCTGACCGC ACGATACCTT ATGAAAGCGT TATTCAATTA ATGATTAGTT TGCAAGGTGC TGGTGTGCCT GCTGTAGGGT TAATGACCGA TTCACCGAAG GAGAAATAG
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Protein sequence | MYQRKRRRPV AEINVVPYID VMLVLLIIFM VTAPIVSQGV KVELPQGNAE SLPPDSKPPI VASIDAAGQY FLNIGSSSNS EVMDLEQVST EVGALIQLEP LRPVVVKADR TIPYESVIQL MISLQGAGVP AVGLMTDSPK EK
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