Gene Sfri_1456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1456 
Symbol 
ID4278460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1740527 
End bp1741192 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content41% 
IMG OID638134231 
Productribonuclease T 
Protein accessionYP_750146 
Protein GI114562633 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID[TIGR01298] ribonuclease T 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.527776 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGATA TTTGCGACGC TAATAAGTTT AAACACCGAT TTCGTGGTTA TTTCCCTGTT 
GTTATCGATG TCGAAACTGC GGGTTTTAAT GCCAATACCG ATGCGTTGCT TGAAATTGCT 
GTCAGCTTAT TAAAAATGAA TAGTGATGGA GTCATTGTAC TTGATAGAAC CCTTCACTTT 
AATATTGAGC CTTTTGAAGG CGCAAACTTA GAACCTGCAG CATTAGCTTT TAACGGTATA 
GACCCCACCA ATCCACTTCG TGGTGCAGTA GACGAAAAAG TCGCTTTTTT AGAGATTTTT 
AAAGAAGTTA AAAAAGCCCA AAAAGCAGCA GATTGTCATC GCAGTATCAT TGTCGCGCAC 
AATGCCGCTT TTGATTTAGG GTTTGTTAAT AAGGCTATTG AACGAAATGG TTTAAAACGA 
TCTCCTTTTC ATCCTTTTGC TAGCTTTGAT ACCGCGACAC TCGCAGGCCT TGCTATTGGA 
CACACTGTAT TAGCTAAAGC CTGTAAAATG GCAGGGATCG ATTTCGACAA TAAAGAAGCC 
CATTCAGCAT TATATGATAC CGAACGTACC GCTGAATTAT TTTGCCTCAT CGTTAACAGA 
TGGAAAGCGT TGGGCGGATG GCCATTAGCG GCTGTGGAAG ATGATAGCGA CTCTACAAGC 
GAATAA
 
Protein sequence
MTDICDANKF KHRFRGYFPV VIDVETAGFN ANTDALLEIA VSLLKMNSDG VIVLDRTLHF 
NIEPFEGANL EPAALAFNGI DPTNPLRGAV DEKVAFLEIF KEVKKAQKAA DCHRSIIVAH 
NAAFDLGFVN KAIERNGLKR SPFHPFASFD TATLAGLAIG HTVLAKACKM AGIDFDNKEA 
HSALYDTERT AELFCLIVNR WKALGGWPLA AVEDDSDSTS E