Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1440 |
Symbol | |
ID | 4277257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1716541 |
End bp | 1717962 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638134215 |
Product | peptidoglycan binding domain-containing protein |
Protein accession | YP_750130 |
Protein GI | 114562617 |
COG category | [S] Function unknown |
COG ID | [COG2989] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTCAGAA AACTGAAACT GTCTGTAAAT GTTTGCATAA TAAGCATATT GCTTTTGTGT ATGTCGCCAT TTGTCTTGGC CAACACTGAA GCTCAATATG AAAATTTAAC TCAACACCTG CAATTACAGT ATTTGGCTGA GCCCACCGCA CAGCGGGCAC AATATTTAGC GATATTACAG ATGGGGTCCG CTGCCGAGCA ATTAGAATAT ATCGACAACA TTCAACAGAG TGTGGCTGCT TTTTGGCATA ATAAACAAGT TTCTCTGCCA TTTGATTCAA TGGATAACAC CACTTCGCTA CGTGACAAAA ATATTGCACT GGAGCCTAGC GTGGATGATT ACCTGGGGGT GATAAACGAT CTGCGTAAGT TAATGTGGTT ATCACAAACG CAAGATTGGC CAGCCATCAC GCTTGAAGGG CTGTTACGCC CTGGAGATCG TCATCCCAGC ATTAAGCAAA TTAATCAACG TTTGTGGTTA TTGGGTGATG CATACGAATA CCTTGAGGAT GAAATAGATT ATCAACCAGC TTTGGTGCAA AGCGTTAAAC GCTTTCAGTC TCGGCATGGG TTAAAGACTG ATGCCGTTAT TGGCCCTAAA ACCTTATTCT GGTTAAATCA AACACCACAA CAACGAGCCT CTTTATTAGC AAAAAGCTTC GTAGAAAAAA CGGTCTATTT GAGCCAACTG CCTCAACCTT ATTTGTTGAT TAATATTCCC GCTTTTCAAA TGGTGCTAGT GGACCAAAAT CAAGTTGTGT TAGCGTCTAA AGTGATTGTA GGTAAGTCAT ATCGACAGAC GCCGGTGATG ACGGGACAAA TTTCCAATAT AGTTATCAAT CCCACATGGA CGGTACCTCG ACAACTTTTA CGTAAGGATA TTTTACCGCA AGTTAGGTCA AATGGGGCTT ACTTTGCCGA TAGACATTTT GATGTGTTTG ATTATGAAGG TCATCGTGTT GATAAAACAC CTCAACAATG GCAACAGGCT GCAACAGGTA AGTTCCCTTA TAGAGTGGTT CAGCGCCCCG GTAGCGGTAA TGCATTAGGC CGCTATAAAT TTCATTTTAA CAATGACCAG AGCGTGTATT TGCATGATAC GCCAACCCCC GAAATGTTCG CACATGTGGA GCGGGATATA TCATCAGGCT GTGTACGAAT TGAAAAGGTG CAACAGTTAG CCGATTGGTT TGCTAACCAT TTGGTTATCG ACAAGCGTAC TTGGGCCCAT TTGCAGTCTA ATCACACTCA AACTCAATGG TTTGCCTTAT CGTCATCTTT ACCTGTGCAC ATGGTGTATT GGCGCGCTTG GGTGGATGAA CAACATGTTG CGCAGTACCG AGATGACATT TATCAATTAA CCCCTGCAGA GTCGATGAAG TTATTAAGCC ATAAAGCCAT CAATAACGAT ATTGTGCAAT AA
|
Protein sequence | MFRKLKLSVN VCIISILLLC MSPFVLANTE AQYENLTQHL QLQYLAEPTA QRAQYLAILQ MGSAAEQLEY IDNIQQSVAA FWHNKQVSLP FDSMDNTTSL RDKNIALEPS VDDYLGVIND LRKLMWLSQT QDWPAITLEG LLRPGDRHPS IKQINQRLWL LGDAYEYLED EIDYQPALVQ SVKRFQSRHG LKTDAVIGPK TLFWLNQTPQ QRASLLAKSF VEKTVYLSQL PQPYLLINIP AFQMVLVDQN QVVLASKVIV GKSYRQTPVM TGQISNIVIN PTWTVPRQLL RKDILPQVRS NGAYFADRHF DVFDYEGHRV DKTPQQWQQA ATGKFPYRVV QRPGSGNALG RYKFHFNNDQ SVYLHDTPTP EMFAHVERDI SSGCVRIEKV QQLADWFANH LVIDKRTWAH LQSNHTQTQW FALSSSLPVH MVYWRAWVDE QHVAQYRDDI YQLTPAESMK LLSHKAINND IVQ
|
| |