| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1401 |
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| Symbol | |
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| ID | 4277094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1672852 |
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| End bp | 1674813 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134175 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_750091 |
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| Protein GI | 114562578 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTAT ATATTGCTGA AAAACCCAGT TTAGGTCGTG CTATTGCCGA TGTTCTGCCA
AAACCACATA AAAAAGGTGA TGGCTTTATC ACTGCTGCTA ATGGTGATTG CGTGTCATGG
TGTATTGGCC ATTTGCTCGA ACAAGCAGAA CCGGACGCCT ATGACGATGC ATTTAAGTCA
TGGAAACTCG AACATCTTCC CATCGTGCCA CAAACGTGGA AACTACAGCC AAAACCTAAA
ACACGCAGTC AACTTACGGT GTTACGTAAA CTGGTTAAGC ACGCGTCATC GATAATTAAT
GCTGGCGATC CAGACCGAGA AGGGCAGTTG CTGGTCGATG AAGTGATTTC TTATTTGGGT
GTGAAAGGAG ACAAACTCAA TCAAGTTCAG CGCTTATTAA TTAGTGATTT AAACCCACAA
GCCGTAAAAC GCGCGCTAGG GCAGTTACGC AAAAATCGTG AGTTTGTGCC GTTATCGACC
TCGGCATTAG CACGAAGCCG CGCTGATTGG TTATATGGCA TGAACATGAC TCGCGCTTAC
ACTATCCAAG GACGAAAAGT CGGCTATCAA GGTGTGTTGT CGGTTGGTCG AGTACAAACA
CCGTTACTCG GGTTAGTGGT ACGCCGCGAT GATGAAATCG CTGATTTTAC CCCTAAAGCA
TTTTACGAAG TATTAGCCCA TTTATTGACA GACCAACAAC AAGCATTCAC CGCAAAATGG
CAACCTAGCG AAGCATGTCA ACCATATATG GATGAAGACG GCCGAGTGTT AGCTAAAGGT
TTAGCCGAAA ATGTCGTTGC CCGTATCAAT GATAAACCTG CGGAAGTCAC TAAAATTGAA
GCTAAAGATA AGCGCCAAAA CCCACCATTA CCTTACAGCT TATCGGCTCT GCAAATAGAT
GCTGCTAAAC GTTTTGGGTT ATCGGCAAAA GAGGTACTGG ATACTTGCCA AAGTTTGTAT
GAGCGCCACA AATTGATTAC TTATCCGCGC TCAGACAGTC GCTATTTACC TAAAGAGCAG
CATGCTTTGG CACCAAAAGT ATTGGATGCC GTGCTCAAAG GCGCTTCAGG CTTAATTGAA
GGTTGTGAGT CTCCTAATAG CAAACTTAAA TCTAAAGCGT GGGACGACAG TAAGGTAGAT
GCTCACCATG CGATAGTGCC AACTGAAAAG GTGGCTAACT TATCGACATT ATCAAGCAAT
GAAGCCAAGT TATATCAACA CGTGGCAAGG CAATATTTAG CCCAGTTCTA TCCCGCTTAT
ATCTATGCAG AAACCGCAGT TGAAGTGACC ATTGCCGGTG GATTATTTAC CACTAAAGCA
CGTCAGGATA AAACTTTAGG TTGGAAGCAA TTATTTAAGC GGACTGCCAC AGTAAATCAA
GCTAGTTCTA ATTCAACTAG CAGCGATGAC GACAATGATG ATGCGGTACT GTCGTTACCG
CCACTGGTTA AAGGGCAAAT ATTGCATTGT CAGCGTGGTG AATTACTACA GAAAATGACT
CAAGCACCGA AGCATTTTAC CGACGCCACT TTATTAGGCG CGATGACGGG CATTAGCCGT
TACGTAACAA ACAGTGAAAT TAAAAAAATC CTTAAAGAAA CCGATGGCTT AGGTACAGAG
GCCACTCGTG CAGGAATTAT TGAATTGCTG TTTAAGCGCG GTTATTTAGT TCGCCAAGGA
AAATCAATAT TGGCAACGCC CGTCGGTGTT GGCTTAATCC GCAGTTTACC CGAATCAGCA
ACCACACCCG ACATGACCGC CTTATGGGAA AACAGCCTCG ATGCTATCAG CCAAAAACGT
TTAAAGTACG ATGCCTTTAT GCAGCCATTG TTGAGCCAGT TAGATGGCCT AATCACTCAA
GCATCGAGTC AGTTACCCTC AGCATTACAA GGTGTTGCCA GTAGCGCACC AAAACGCAGC
TTTAAGAAAT CGTATAAAAA GAAGGCTAAA GCGAAAAGCT AA
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| Protein sequence | MILYIAEKPS LGRAIADVLP KPHKKGDGFI TAANGDCVSW CIGHLLEQAE PDAYDDAFKS
WKLEHLPIVP QTWKLQPKPK TRSQLTVLRK LVKHASSIIN AGDPDREGQL LVDEVISYLG
VKGDKLNQVQ RLLISDLNPQ AVKRALGQLR KNREFVPLST SALARSRADW LYGMNMTRAY
TIQGRKVGYQ GVLSVGRVQT PLLGLVVRRD DEIADFTPKA FYEVLAHLLT DQQQAFTAKW
QPSEACQPYM DEDGRVLAKG LAENVVARIN DKPAEVTKIE AKDKRQNPPL PYSLSALQID
AAKRFGLSAK EVLDTCQSLY ERHKLITYPR SDSRYLPKEQ HALAPKVLDA VLKGASGLIE
GCESPNSKLK SKAWDDSKVD AHHAIVPTEK VANLSTLSSN EAKLYQHVAR QYLAQFYPAY
IYAETAVEVT IAGGLFTTKA RQDKTLGWKQ LFKRTATVNQ ASSNSTSSDD DNDDAVLSLP
PLVKGQILHC QRGELLQKMT QAPKHFTDAT LLGAMTGISR YVTNSEIKKI LKETDGLGTE
ATRAGIIELL FKRGYLVRQG KSILATPVGV GLIRSLPESA TTPDMTALWE NSLDAISQKR
LKYDAFMQPL LSQLDGLITQ ASSQLPSALQ GVASSAPKRS FKKSYKKKAK AKS
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