Gene Sfri_1393 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1393 
Symbol 
ID4277016 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1660688 
End bp1661704 
Gene Length1017 bp 
Protein Length338 aa 
Translation table11 
GC content42% 
IMG OID638134167 
Productaspartate-semialdehyde dehydrogenase 
Protein accessionYP_750083 
Protein GI114562570 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0136] Aspartate-semialdehyde dehydrogenase 
TIGRFAM ID[TIGR01296] aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.336042 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCAGG AATTTAATGT AGTCGTTTTA GGTGCATCGG GCGCAGTGGG TCAAACAATG 
ATTGAGATCC TCGAGCAGCG TAATTTTCCG GTTGCTAAGT TGTTTCCATT AGCGAGCAGT 
CGCAGTGCTG GCGAAACGGT CAGTTTTCAC GGTAAACAAG TTGAAATTCT TGACGTAGAA 
ACGTTTGATT GGACCCAAGC ACAAATTGGC TTCTTTTCTG CTGGTGGCGA TGTGTCTGCT 
AAATGGGCGC CGATTGCGGG TGACGCGGGT TGTGTTGTTA TCGATAACAC TTCACATTTT 
CGTTACGACG TAGATGTGCC ACTGGTGATA CCAGAAGTTA ACCCAGAAGC CATTGCTGAT 
TTCCGCAATC GCAATATCAT CGCTAATCCT AATTGTTCAA CGATTCAGAT GTTAGTGGCT 
CTTAAGCCTA TTTATGATGC TTTTGGTATT TCACGTATTA ACGTGGCGAC GTATCAGTCA 
GTGTCTGGAA CAGGTAAAAA GGCGATTGAT GAGCTAGCGG GTCAAAGTGC TAAATTATTG 
CAAGGTTTAC CGTCAGAGCC GACAGTTTAT CCAAAGCAAA TTGCCTTTAA CGTATTGCCT 
CAAATTGATG TGTTTATGGA AAATGGCTAC ACCAAAGAAG AAATGAAAAT GGTGTGGGAA 
ACGCAGAAAA TTTTTGGTGA TGACGAAATT GTTGTTAATC CAACGGCTGT GCGTGTGCCT 
GTTTTTTATG GTCACTCTGA GGCTATTCAT ATTGAAACTC GTCAACCTGT TGATGCCGAA 
GATGTTAAAG CTGTTTTACG TGATGCACCA GGCGTAGAAT TGTTTGATGA TGATAGCGAA 
TATCCAACAG CGGTAACTGA AGCTGCAGGT AATGATCCTG TTTATGTTGG TCGCGTTCGT 
AAAGATATTT CACACTCTCA CGGTATAAAT TTATGGGTTA CTGCCGATAA CATTCGTAAG 
GGTGCTGCAT TAAACAGCGT ACAAATTGCC GAGATTTTGA TTAGAGATTA CTATTAA
 
Protein sequence
MSQEFNVVVL GASGAVGQTM IEILEQRNFP VAKLFPLASS RSAGETVSFH GKQVEILDVE 
TFDWTQAQIG FFSAGGDVSA KWAPIAGDAG CVVIDNTSHF RYDVDVPLVI PEVNPEAIAD 
FRNRNIIANP NCSTIQMLVA LKPIYDAFGI SRINVATYQS VSGTGKKAID ELAGQSAKLL 
QGLPSEPTVY PKQIAFNVLP QIDVFMENGY TKEEMKMVWE TQKIFGDDEI VVNPTAVRVP 
VFYGHSEAIH IETRQPVDAE DVKAVLRDAP GVELFDDDSE YPTAVTEAAG NDPVYVGRVR 
KDISHSHGIN LWVTADNIRK GAALNSVQIA EILIRDYY