Gene Sfri_1390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1390 
Symbol 
ID4277013 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1655505 
End bp1657598 
Gene Length2094 bp 
Protein Length697 aa 
Translation table11 
GC content43% 
IMG OID638134164 
ProductFAD dependent oxidoreductase 
Protein accessionYP_750080 
Protein GI114562567 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID[TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAACAAAA CACCTTTATT ATCTGTATCC CCGAACCTAC ACGAGTTGCA TATTTGTGAA 
TTACTGGGCA ACAACGCCAA TCAAAATAGC CGATATTCCC ACATTGTTAA GCAGTATATC
GCCGAAGTAT TGCAAAGCAG TGACGATAAA ATAGCAGCCA CAAATACTCA ACCACATTTA
CTAACGCTAG GCCAACTCGG TTTTGGCGAT GGCCACGAAA TAATACTATT ACTGGCAGCC
TTACAAGAGG CTAACTTGCA AAATCCTTTG ATACAGCAAC AAACTCGAAT TCACATCAGT
GTATTTGAAC AAGGCCCAGT AAACTGTAAG CAACTGCAAC ATACATGGCA ACAACAAGGG
CTACTTGATT CAGACCATCA TTTATTCGAT TTTACCCAAG CATTACTCAA TGGTGAAATT
GCAGCCATCG AAGGTTGCCA GCGACTGAGT CTACTCCAAA ACCAAATTAT CATTGACCTG
TATCAAGGTT CGCCACTAGC GCAAGCCAAA ACCATTGCTA CGCCGAATAA ACAAAGGATA
ACACATTGGT TTGCCCTACC CCATACGAAC CAAGAGGCTC ATTCAGATCA ATATTTTCAT
CAGCGTTCAG TTTGGGAATA TGGTCGACTC AGTGTTGATA ATGCAACATT TTTAGCGGCT
AGCACAAATG ACGAAAATAT TGCTCCAACT ATCAAAAAGC AACTAGCATT TTGCGGATTT
TTATCCTCCA CATCATTCAA ATCGACTGAT GACATTGCTA TCGCAGAACG TAACGCGCTA
AGACAACAAC TACAGCAACA GTTTGCTTAT AACCCATTGC CACCGTTACA TTCTAATAAC
AACAGCCCTA TAGCTATTAT AGGTGGCGGT ATCGCTTCTG CAAGTCTTGC CTTGTCTCTG
GCTGAACGCG GCAAAGATGT GATTATTTAT TGCAAAGATG ACACATTAGG ACAAGGCGCA
TCAGGCAACA AACAAGGTGC TATTTATCCC CTGCTTACAC CCGAAAATGG CTCGCTAAGT
CAATTTTTCC AACAAGTCTT TCTATACAGT CGACGCAGAA TTCAGGCATT AGTTGATGAT
GGATATGACA TAGGACATGA GTGGTGTGGT GTATTACACA CAGGTTTCGA TCAACGTAGC
CAAACAAGAT TGGATAAAAT TATTGATGGC CAAGCATGGC CAAGTGAAAT TGCTTTTGCT
GTCAGTCCAC ACCAAGCTAC ACAACTTGCT AACGTCGATA TTGATAAACC TGGCTTTTAT
TATCCATTAG GCGGTTGGGC TTGTCCGTTT GAATTCGCAC AAGCAAGTAT TGCCAAAGCA
CAAACATTAA CCAAAGTTCG CATTGTCTAT AATAGCGACA TTAGCTCACT TGAATCACAC
TCATCTGGCT GGCAACTGTT TAGCGCCGAA GACAATACCC CTATAGCAAC CCACGAACAG
GTTGTCATCG CATCAGGAGC TCAACTTACT CAGTATAAAC AGACAAAAAA CCTGCAAATC
ACTGGGTTTA GAGGTCAAGT TAGCCATGTA CCGCCACAAG GTGAACTGGC ACAGCTTAAT
ACTGTTATCT GCGCCAATGG TTATTTAACG CCACAACATA ACCAATTACA TTGCGTTGGA
GCAAGTTATG TAAAAGACCC ACAACATCTT GATTTTTGCC CGATAGAGCA GCATGAAAAC
AGCCTTAAAA TGAAACAAAG CTTTCCTAAT TCAAACTGGC CTAATGATAT TGATGTTTCA
AACAACGATG CCAGAGTTGG CGTAAGGATG GTCAGTCGCG ATCACTTTCC GGTAATGGGT
TGTGCGCCTG ATGTTGAAGC GTTATTTACA CGCTATGCTG TTCAACAGCA ATCGAAAGAC
AAACCCAGTC TATGGCAACA TTACTGGCAA ACAACACCAG CACCAATTTA TGACGGGTTA
TATGTGTTAG GAGGACTAGG CTCACGCGGC CTAAGCTCAG GCCCATTAGT CGCCGAATGC
TTAGCAGCAA ATCTATGTGG CGAATTATCA CCATTAAGCG TAGAGCTACA AGCCTTACTT
AGCCCTAACC GAATGTGGCT GCGTAAACTG CTTAAAGGAA AAGCGTTGAT GTGA
 
Protein sequence
MNKTPLLSVS PNLHELHICE LLGNNANQNS RYSHIVKQYI AEVLQSSDDK IAATNTQPHL 
LTLGQLGFGD GHEIILLLAA LQEANLQNPL IQQQTRIHIS VFEQGPVNCK QLQHTWQQQG
LLDSDHHLFD FTQALLNGEI AAIEGCQRLS LLQNQIIIDL YQGSPLAQAK TIATPNKQRI
THWFALPHTN QEAHSDQYFH QRSVWEYGRL SVDNATFLAA STNDENIAPT IKKQLAFCGF
LSSTSFKSTD DIAIAERNAL RQQLQQQFAY NPLPPLHSNN NSPIAIIGGG IASASLALSL
AERGKDVIIY CKDDTLGQGA SGNKQGAIYP LLTPENGSLS QFFQQVFLYS RRRIQALVDD
GYDIGHEWCG VLHTGFDQRS QTRLDKIIDG QAWPSEIAFA VSPHQATQLA NVDIDKPGFY
YPLGGWACPF EFAQASIAKA QTLTKVRIVY NSDISSLESH SSGWQLFSAE DNTPIATHEQ
VVIASGAQLT QYKQTKNLQI TGFRGQVSHV PPQGELAQLN TVICANGYLT PQHNQLHCVG
ASYVKDPQHL DFCPIEQHEN SLKMKQSFPN SNWPNDIDVS NNDARVGVRM VSRDHFPVMG
CAPDVEALFT RYAVQQQSKD KPSLWQHYWQ TTPAPIYDGL YVLGGLGSRG LSSGPLVAEC
LAANLCGELS PLSVELQALL SPNRMWLRKL LKGKALM