| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1330 |
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| Symbol | |
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| ID | 4278004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1583426 |
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| End bp | 1584964 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134105 |
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| Product | transcriptional regulator, TyrR |
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| Protein accession | YP_750021 |
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| Protein GI | 114562508 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0540713 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTTGG AAGTCAGCTG TATCGATCGC GTGGGTTTAG CGAAAGACAT CCTCGTCGTG
CTTGAAAAAC ATGGTATTAA CTTAATTGCC ATTGATGCTA GTAATAAAGG TTTCCTGTTT
TTGCAGTTTG CAGAAATCAG TTTCGAAACC CTGCGTGAGC TTATGCCACA AATTCGCAAA
GTCGAAAGTG TGCATGATGT CCGTACCGTA TCTTTTATGC CGTCAGAGCA AGAACATTAC
GCCCTAAAAA CCTTACTTAA AACCTTACCC GATTCGGTGT TTTCAACAGA CGCGAAAGGG
CGGATCCGCA TAGCCAATGA GTCGGCTTTA TTGACGCTTG GTATGGCTGA ACATGAAGTG
GTGGGTGAGT CACTTAATCA TTGGGTGCAA GGATTTAACT TTGCTCGTTG GATGAGTGAA
ATACCGGTGT TGGCGCAAGC CACACGAGTA CAAATTAACT CGAGCGAGTA TTTGGCTGAA
ATGCTGCCAA TTTACTTACC CGATGATGAT GATAAAACCA TTTTAGCGGG TGCGGTTATC
TCGCTAAAGT CACCTGCTAG AGTGGGTAAA CAGTTTAATG CCCTGCAAAA TCAAACTACT
GGTTTTGATA ATGTATTGGC TATCAGCGAC AAAATGAAAG ACATACTCAA GCAAGCCAAA
CGTATGGCGC AACTTGATGC ACCGTTACTT ATCACCGGTG AAACGGGAAC GGGTAAAGAG
TTGATGGCCC GTGCGAGTCA TGACGCCAGC ATGCGCCGCG AACATCCTTT TATCGCGATT
AACTGTGCCG CTCTGCCTGA TAGTGTTGCT GAAGAAGAGC TGTTTGGCTT TGTCAGTAAT
GGCACAGTCG TTAAACGTGG TCTATTTGAA GAAGCAAAAG GCGGTACGGT ATTTCTTGAT
GAAATAGCCG AGATGTCCAA AACCGCACAA GTTAAATTAT TGCGTTTATT ACAAGACGGG
ACTTTTAGAC GGATTGGTGG CGATGAAGAA GTGCGCGCCG ATGTACGAAT TATTTGCTCA
ACCCAAAAAC ACTTAGCTGA ACTTTGCCAA TCCGGTGAGT TTAGAGAAGA TTTGTATTAT
CGAATCCATG TTTTAAGTTA TCACATGCCA TCACTGCGTG AGCGTCGCGT GGATGTGATT
CCATTAACTG AGATGTTTTT AGAGCATTAT AGTCAGCAGT TATCGAGTCC CTTAAGGCGT
ATATCGGCAA GTTGTCGCGA TTACCTATTT ACCTACGCAT GGCCGGGTAA TGTGCGCCAA
TTGAAAAATG CGATTTTTAG AGCGGTATCA ATGTGGGATG GCTCAACAGA ATTGACTGTT
GAACAACTTA AATTACCTTC ATATGCCGAA GGATTTGGTT ATTTCGATGA AGAGTTTGAG
GGCACGTTAG ACGAGGCGAT GAAAGAATAT GAAGCCAGTT TATTACGTCG GTTATATCCC
GCGTACCCAA GTACACGCCA ATTAGCCAAA AAGTTAGGTG TGTCTCACAC CGCTATTGCT
AACAAGTTGC GTGATTACAG TATTAGTAAG AAAAAGTAA
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| Protein sequence | MRLEVSCIDR VGLAKDILVV LEKHGINLIA IDASNKGFLF LQFAEISFET LRELMPQIRK
VESVHDVRTV SFMPSEQEHY ALKTLLKTLP DSVFSTDAKG RIRIANESAL LTLGMAEHEV
VGESLNHWVQ GFNFARWMSE IPVLAQATRV QINSSEYLAE MLPIYLPDDD DKTILAGAVI
SLKSPARVGK QFNALQNQTT GFDNVLAISD KMKDILKQAK RMAQLDAPLL ITGETGTGKE
LMARASHDAS MRREHPFIAI NCAALPDSVA EEELFGFVSN GTVVKRGLFE EAKGGTVFLD
EIAEMSKTAQ VKLLRLLQDG TFRRIGGDEE VRADVRIICS TQKHLAELCQ SGEFREDLYY
RIHVLSYHMP SLRERRVDVI PLTEMFLEHY SQQLSSPLRR ISASCRDYLF TYAWPGNVRQ
LKNAIFRAVS MWDGSTELTV EQLKLPSYAE GFGYFDEEFE GTLDEAMKEY EASLLRRLYP
AYPSTRQLAK KLGVSHTAIA NKLRDYSISK KK
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