Gene Sfri_1315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1315 
Symbol 
ID4277377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1566740 
End bp1568068 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content44% 
IMG OID638134090 
Productsugar (glycoside-Pentoside-hexuronide) transporter 
Protein accessionYP_750006 
Protein GI114562493 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2211] Na+/melibiose symporter and related transporters 
TIGRFAM ID[TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAGCA CCAGAGAAAA AATAGCTTAC GGACTCGGGG ACACTGCCAG TAATATTGTG 
TTCCAAACAG TCATGCTGTT TTTAACTTTT TTCTATACCG ACATTTTCGG TATCTCGCCA
GCATTTGTCG GCACCATGTT TTTAGCAGTA CGCTTAATTG ATGCGGTTAC CGATCCGTTA
ATGGGCGCGC TAGCAGACCG CACCAATACC CGCTGGGGTA AGTTTAGACC TTATCTTTTG
TGGTTTGCCC TACCCTTTGG TTTTATCAGT GTTTTAGCCT TTACCACCCC AGACTTAACC
GAAGACGGCA AAATGATTTA TGCCTTCGTC ACTTATACCG CACTTATGAT GGTCTACACC
GCCATTAATA TCCCTTATTG TGCATTAGGC GGCGTGTTAA CGGCCGATCC AAAAGAGCGA
GTGTCAGTAC AATCTTACCG TTTTGTATTT GCGATGTTGG GCGGCTTACT CGTTTCAGGC
TTAACCTTAC CCCTTGTTGA GTACTTAGGT GAAGGCGACC AAGCTAAAGG TTATCAACTG
ACGATTACCG CCATGAGCAT CTTAGGCGTT GCGATGTTTT TAGCCTGTTT CTGGGGCACT
AAGGAACGCC TACACCCGCC GGTTGATCAA CAATCTAGCT TTAAGAAAGA CTTTACCGAC
ATGCTCAAAA ATGACCAATG GCGTGTGCTT GCTATTGCAG CAGTATGTTT ATTATCAGGC
ATGGTGTTAC GCACCAGTTT AGCCATTTAC TACGTTAAAT ATTTCCTTAA CATGCCAGAC
TCCATCACCC TCTTTATCAC CCTAGGAATG GTCGGTAATA TATTTGGCTG TATTTTAGCT
GAGCCTTTGG CTAAACGCTT TTGTAAAGTT AAAGCTTATA TCACCTTGCA ACTCCTTGCG
GCAGCGATGT GCGTAGTGAG CTACTTTGTA CCTAGCGATC AAGTCGTACT CGCCTTTGGC
ATGTTTATTA TCTGGGGCTT TACCTTCAAC ATGGCCACCC CACTATTGTG GGCAAAAATG
GCTGATGTTG TCGATTATGG CCAATATAAA AACGGCGTTC GTATTACCGG GATGATTTAT
TCTTCAGTGA TTTTCTTTAT CAAACTGGGT GTCGCCATTG GTGGCGCTTC TGCGGGGTGG
TTATTAGCGG GTTATGGTTA TCAGCCTGAT ACCATGCAGA CGGAGCATAC TCAGCAAGGA
ATATTATTAT CATTCACTAT TTACCCTGCT ATTGGTTCAT TAGTGGTGGC TTTTGTAATG
CGTTGGTACA CCTTAGATAA TCAAAAAGTG GACCAAATTC ACTTAGAATT AAATAGAGAA
GCAAAATAA
 
Protein sequence
MISTREKIAY GLGDTASNIV FQTVMLFLTF FYTDIFGISP AFVGTMFLAV RLIDAVTDPL 
MGALADRTNT RWGKFRPYLL WFALPFGFIS VLAFTTPDLT EDGKMIYAFV TYTALMMVYT
AINIPYCALG GVLTADPKER VSVQSYRFVF AMLGGLLVSG LTLPLVEYLG EGDQAKGYQL
TITAMSILGV AMFLACFWGT KERLHPPVDQ QSSFKKDFTD MLKNDQWRVL AIAAVCLLSG
MVLRTSLAIY YVKYFLNMPD SITLFITLGM VGNIFGCILA EPLAKRFCKV KAYITLQLLA
AAMCVVSYFV PSDQVVLAFG MFIIWGFTFN MATPLLWAKM ADVVDYGQYK NGVRITGMIY
SSVIFFIKLG VAIGGASAGW LLAGYGYQPD TMQTEHTQQG ILLSFTIYPA IGSLVVAFVM
RWYTLDNQKV DQIHLELNRE AK