Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1286 |
Symbol | |
ID | 4278397 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1522569 |
End bp | 1524035 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638134061 |
Product | tRNA(Ile)-lysidine synthetase |
Protein accession | YP_749977 |
Protein GI | 114562464 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning |
COG ID | [COG0037] Predicted ATPase of the PP-loop superfamily implicated in cell cycle control |
TIGRFAM ID | [TIGR02432] tRNA(Ile)-lysidine synthetase, N-terminal domain [TIGR02433] tRNA(Ile)-lysidine synthetase, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.170507 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGAAA AGTCTTCGTT AACAGAGCAA ATAAGTGCAC CACAACTGCT AAGTTTGCTC GAACAAGCGA TATTACCCCT TTATCAAATG AGTGTGGTTA AAGGTGAGTC ATCGCCTAAG TTAGTACTGG CTTACAGTGG CGGCGTTGAC TCAGAGGTGC TCGCGTGTGG ATTAAGTGCC TTGGCACACA AACATCCGCA TATTGCTTGC CTGCTTATTC ATGTTCATCA TGGGCTAAGT GCCAATGCTG ACATTTGGGT ACAGCACTGT ATCACTCGAG CCAATCATTA TCAGCTGCCA GTGCAGATTG AGCGAGTTAA GGTTGAAAAG GGCCCTCGGC AGAGTCTAGA GGCGCAAGCC CGCGATGCTC GTTACCAAGC ATTTGACCGT TATCTTAATC CCGGTGACAT TTTACTGACC GCCCATCATC AAGATGATCA ACTTGAAACC TTATTACTCG CGTTAAAACG TGGTCAAGGC CCAAAAGGGT TGGCGGCAAT GGGGGCGATA CAAGCTTACA AGCAAGCTTG GCTAGTTAGA CCGTTATTGG ATATCAGCCG CGATCAAATA GAGCAATTTG CGGCGCAAAA ACAACTATCC CATATCGAAG ATGAAAGTAA CCAGGACGAC AGCTTTGATA GAAATTTTTT ACGCCTGGAT ATCATTCCAA GATTAAAACA GCGTTGGCCA AGTATTGCGA CCACCGCAGG GCGTAGCGCC GCATTATGTG CCGAGCAGCA ACAGGTTATT GATGACGAAG TGAGTCATCG CTTACCCGAG TGGTTAATAG TGCCAGGCGA TACAAATGCA TTAATGACCG AATCAACCGG GTTTAAACTC ACCGGGTTTG GTCAATTGAG TGCCGCTTGG CAAGCATTAC TGTTTCGCGG TTATTTAATT TATTGTGGCG TTAATTTACC GTCGCAAGCA CAATTACAGC AGATCCTGTC ACAACTGTTA GCGGCTAAAG ACGACGCTAA TATATCGATT CAGTGGGGCG ATTATCAGGT TAAACGCTTT GCTGGTATCG CTTATGTTGT TAGCCATAAA GAGCTCGACG CTATTGATGC AAGTGCAGTG CAACAACAAT TTGAGCAACT GCTTAAAGGC GAGCTGCAAC AAACAGTGTG CCGAGTTGGG CACAAGCAAT GCCAGATCGG TCTGCAAATC GCCACAGACA ATACGCCGCT TCTTGCTTTA CCGAATAATA CCGTTGTGAG CATACGTTTT GGCGCTGCAG GTTCAATTAA ATGCCAGCCA CAATTTGCCA CATCACAACG GCAAAAAGCG CGCGAATTAA AGAAATTGTG GCAAGAATGC AATATCCCGC CATGGCGAAG ACCACAAATC CCGTTAGTTT TTTATGGTGA CACCTTAGTG GCCGCCGTTG GTTTATGGGT CGACAAACGC TACCTTGCCC AAACCGGTGA TCAAGGGATT TGTATACCGC TTTTGAACAC CCGATGA
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Protein sequence | MIEKSSLTEQ ISAPQLLSLL EQAILPLYQM SVVKGESSPK LVLAYSGGVD SEVLACGLSA LAHKHPHIAC LLIHVHHGLS ANADIWVQHC ITRANHYQLP VQIERVKVEK GPRQSLEAQA RDARYQAFDR YLNPGDILLT AHHQDDQLET LLLALKRGQG PKGLAAMGAI QAYKQAWLVR PLLDISRDQI EQFAAQKQLS HIEDESNQDD SFDRNFLRLD IIPRLKQRWP SIATTAGRSA ALCAEQQQVI DDEVSHRLPE WLIVPGDTNA LMTESTGFKL TGFGQLSAAW QALLFRGYLI YCGVNLPSQA QLQQILSQLL AAKDDANISI QWGDYQVKRF AGIAYVVSHK ELDAIDASAV QQQFEQLLKG ELQQTVCRVG HKQCQIGLQI ATDNTPLLAL PNNTVVSIRF GAAGSIKCQP QFATSQRQKA RELKKLWQEC NIPPWRRPQI PLVFYGDTLV AAVGLWVDKR YLAQTGDQGI CIPLLNTR
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