| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1277 |
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| Symbol | |
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| ID | 4278388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1510419 |
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| End bp | 1511789 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638134052 |
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| Product | putative membrane-associated zinc metalloprotease |
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| Protein accession | YP_749968 |
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| Protein GI | 114562455 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.358202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATAGATT TTTTTTGGAG CTTGGGTTCA TTTATCGTCG CATTGGGTAT TTTGATTACA
GCCCACGAGT ATGGCCATTT TTGGGTTGCC CGTCGTTGTG GCGTTAAAGT CGAGCGTTTC
TCTATCGGTT TTGGCAAAGC GATTTGGCGT AAAGTGGGTA AAGATGGCAC TGAATATGTT
GTCGCTATGA TCCCCTTGGG TGGTTATGTC AAAATGCTTG ATGAACGCGT TGAAGACGTC
CCAGCCGAGC TAGTCGACCA AGCCTTTAAT CGTAAAACGG TTTGGCAACG TATTGCGATT
GTATCTGCAG GCCCTATTGC CAACTTTATT TTTGCTATAG CAGCGTTATA TGTCATGTAT
CTTATTGGTA CTCCGTCGAT TAAGCCGGTC ATTGACAGTA CTAAACTAAA TAGCCCAGCT
AGTGTTATTC AGTTGGTTGA ACCACAACAA ATTATAGCGG TATCAGGACA ACCGGTACGT
ACTTGGGAAG AAGTTAATTT AGCCTTAGTA GGTCATATTG GTGATGACAG TATTGAGTTA
TCCCTAGCAC CATTACCAGA GTTGTCTGGC ATGGATATGC CAGTTCGCAC CGTAAAACTC
GATACGCGAA ATTGGATATT TGATCCAGAA AAAGAGTCGC CGATAACTGC ACTCGGTTTG
GGGATATTTC GTCCAGGGAT TGATCCAACG ATAGCGGCAG TGAGTAAAGA CAGTGCGGCA
GAGCAAGCGG GCATTAAGAT TGGCGATAAA CTCGTCAACA TCAATGGCAC TCAATACAGC
GATTGGAATG CGTTTGTTGA TGTGGTACAA AGCTCTGCCA ATAAAAATAT TAATATGACA
TTGATGCGTC AAGGTGAACT TATCAATGTT GATGTTGTGC CAAAAGCACA ACAAAATTCT
GATGGTAAAA CTATCGGAAT TGTTGGAATT AGCCCAACCC AAGCCCAATG GCCTGATAAT
ATGCGCTTTG AGCTTGAGTA TGGCATAGTA GATTCTGTTA TCGCTGCAAC TGACAAAACA
TGGCAACTCG TTGTCGTCAG CTTCAAGATG ATTGGAAAAT TATTTACCGG CGATGTGTCG
GTGAAAAACC TTAGTGGTCC TATTTCGATT GCACAAGGCG CAGGCGCCAG TGCAAGTTAC
GGCTTAGTGT ATTTTCTAGG GTTTATCGCG CTCATCAGCG TTAACTTAGG CATTATTAAT
TTAATGCCTC TGCCAGTGCT CGATGGGGGA CACTTGCTGT ATTACTTTGT AGAAGTGATT
ACTGGTAAGC CTGTACCCGA AAAGGTACAG GAAATAGGAT TCAGGTTTGG CGCAGCTTTG
CTGCTAATGT TGATGGGCGT AGCCTTATTC AACGATTTTG CCCGACTCTG A
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| Protein sequence | MIDFFWSLGS FIVALGILIT AHEYGHFWVA RRCGVKVERF SIGFGKAIWR KVGKDGTEYV
VAMIPLGGYV KMLDERVEDV PAELVDQAFN RKTVWQRIAI VSAGPIANFI FAIAALYVMY
LIGTPSIKPV IDSTKLNSPA SVIQLVEPQQ IIAVSGQPVR TWEEVNLALV GHIGDDSIEL
SLAPLPELSG MDMPVRTVKL DTRNWIFDPE KESPITALGL GIFRPGIDPT IAAVSKDSAA
EQAGIKIGDK LVNINGTQYS DWNAFVDVVQ SSANKNINMT LMRQGELINV DVVPKAQQNS
DGKTIGIVGI SPTQAQWPDN MRFELEYGIV DSVIAATDKT WQLVVVSFKM IGKLFTGDVS
VKNLSGPISI AQGAGASASY GLVYFLGFIA LISVNLGIIN LMPLPVLDGG HLLYYFVEVI
TGKPVPEKVQ EIGFRFGAAL LLMLMGVALF NDFARL
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