| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1267 |
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| Symbol | dapD |
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| ID | 4277399 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1499626 |
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| End bp | 1500450 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134042 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_749958 |
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| Protein GI | 114562445 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGCTT TACGCCAACG CATTGAAGCA GCATTCGAAA CACGTCAAGA TATCTCACCT
TCAAGCGTAG AACCTAGTGT TCGCGCCGAT GTTGAAACCG TGATCAATAT GCTCGATAAA
GGCCAAGCAC GCGTTGCTGA AAAGATTGAC GGAGAATGGC ATGTACACCA ATGGCTTAAA
AAAGCCGTAC TCCTGTCTTT CCGCATTTTT GATAACGGCG TGATTGAAGG TGGCGACACC
AAATATTTCG ACAAAGTTCC GCAAAAATTT GCCGATTATG ATGAAGCCCG TTTCAAAGCA
GAAGGCATTC GAGTTGTGCC ACCAGCAACG GTTCGCAAAG GCTCATTTAT TGGTAAGAAC
ACGGTATTAA TGCCATCCTA CGTTAACCTT GGTGCTTATG TTGATGAAGG CACTATGGTT
GATACATGGG CCACTGTTGG TTCGTGTGCG CAGATAGGTA AAAACGTACA CTTGTCTGGC
GGTGTTGGTA TTGGCGGTGT ATTAGAGCCA TTACAAGCAG GTCCAACCAT TATTGAAGAC
AACTGTTTTA TTGGTGCTCG CAGCGAAATC GTTGAAGGTG TTGTTGTTGA AGAAGGCAGC
GTAATTTCAA TGGGCGTTTA CATTGGTCAA AGCACGCGAA TTTTTGATCG TGAAACCGGT
GAAGTGCATT ACGGTCGTGT TCCTGCTGGC TCGGTTGTCG TATCAGGTAA CCTACCATCA
GCGTGTGGCA CATACAGCTT ATATGCAGCG ATTATTGTCA AAAAAGTTGA TGCTAAAACT
CGCGGTAAAG TGGGTATCAA TGAACTATTA CGCATTGTTG ATTAA
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| Protein sequence | MEALRQRIEA AFETRQDISP SSVEPSVRAD VETVINMLDK GQARVAEKID GEWHVHQWLK
KAVLLSFRIF DNGVIEGGDT KYFDKVPQKF ADYDEARFKA EGIRVVPPAT VRKGSFIGKN
TVLMPSYVNL GAYVDEGTMV DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQAGPTIIED
NCFIGARSEI VEGVVVEEGS VISMGVYIGQ STRIFDRETG EVHYGRVPAG SVVVSGNLPS
ACGTYSLYAA IIVKKVDAKT RGKVGINELL RIVD
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