Gene Sfri_1076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1076 
Symbol 
ID4277838 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1272958 
End bp1273449 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content47% 
IMG OID638133850 
Productphosphoribosylaminoimidazole carboxylase, catalytic subunit 
Protein accessionYP_749767 
Protein GI114562254 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 
TIGRFAM ID[TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.161803 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAGCCC TAGTTGCTGT TGTAATGGGT TCGAAAAGTG ATTGGCCGAC AATGGAAGCC 
GCCGCTGAGA TTATGGATAA GTTACAAGTG CCTTATCATG TTGAAGTTGT TTCAGCTCAC 
AGAACACCAG ACAAGCTAAT GGAATTTGCA AGTTCTGCTG CAGATAAAGG CTATAAAGTC 
ATTATTGGTG GCGCAGGCGG AGCAGCCCAT TTACCAGGCA TGATCGCCTC TAAAACGCGT 
TTGCCAGTAT TGGGAGTCCC AGTACAAAGC AAGGCGCTAT CTGGCATGGA CAGTCTATTG 
TCTATTGTAC AAATGCCTAA AGGGATTGCC GTTGGCACCT TGGCTATCGG TACGGCTGGT 
GCGTTTAACG CAGGTTTACT TGCTAGCCAA ATTTTGGCGA TTACCGATGC CGCTTTAGCT 
GAGCGTTTAG AAGCATTTCG TGATGAGCAG ACTCGCTCGA TCCTTGATAA TCCCGATCCG 
AGAGAAGACT AA
 
Protein sequence
MQALVAVVMG SKSDWPTMEA AAEIMDKLQV PYHVEVVSAH RTPDKLMEFA SSAADKGYKV 
IIGGAGGAAH LPGMIASKTR LPVLGVPVQS KALSGMDSLL SIVQMPKGIA VGTLAIGTAG 
AFNAGLLASQ ILAITDAALA ERLEAFRDEQ TRSILDNPDP RED