Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1049 |
Symbol | |
ID | 4278214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1234926 |
End bp | 1237196 |
Gene Length | 2271 bp |
Protein Length | 756 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133817 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_749740 |
Protein GI | 114562227 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000145818 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACACTA TGCCATGTGC ATATGGTTGG ATGTCAGTCG GTCATGCGGC TAAGGAAGGG TTCATGGTAT CTGTTCGCGA AGCACATTTT AATACGCAAG CATTCCAATT AGATGAGTGG GTCGCTCGTT ATCTCGACGA CAAAGATGAT GCTCAGAAGT TATTGGTATT GATCCAGCAA GTTGAGGCCC TACCGGTTAA AAACAAACTG GCTCATACTG AACTGCTTGC GCGCGCTCGC GAAATGATCG AAATCTTAGC GCCGCTGAAT ATGGACATCG AAACGCTACA AGCCGCAGTA TTATTTTTGC TATTCGATGC GGGTGTTCTC AACGAAGAGC AAATTCTAGA GCAATACGGT GAAAACCTTG CAAGGTTAGT TGCCAGCGTT GTGACCATGA ATGCCATTGG CGCATTAAAA GTCAGTCAAA ATTCGCGCGA TGCCGAACCT CAAATAGATA ACATCCGAAA AATGTTATTG GCCATGGTTG AAGATGTTCG TGCCGTAGTG ATCAAATTAG CCGAACGTGT ATGCTTACTG CGTGCGGTAA AAAACGCCGA TGAAGAAACT CGGGTATTAT TAGCACGAGA AATTGCTGAT ATTTATGCGC CATTAGCAAA TCGCTTAGGC ATTGGTCAAT TAAAGTGGGA GCTTGAAGAT ATTTCTTTTC GCTATTTGCA TCCAACCGTT TATAAAGACA TTGCTAAACA GCTTGATGGT AAGCGTGTCG ACCGAGAAGT GTTTATCGAC AAGTTTGTCA CCCAGTTACA GCAACGTTTA GATAGCGATG ATATTCGCGC CAAAGTGTAC GGTCGCCCAA AACACATTTA CAGTATTTGG CGAAAAATGA AGGGCAAAGA TCTCAAGTTT GATGAGCTTT TTGACGTTCG TGCAGTGCGT ATTGTCACCG AAAGATTACA AGATTGCTAT GGCGCGTTAG GGGTTGTACA TGACCTTTGG CACCATATTC CGCGTGAGTT TGACGATTAC GTAGCAAATC CAAAACCGAA CGGCTATCAA TCTATTCATA CAGTAGTCGT AGGTCCTGAA GGCAAAACAG TAGAAATTCA AATTCGTACT GAGGCGATGC ATCAAGATTC TGAGCTTGGC GTTGCCGCGC ACTGGAAATA CAAAGAAGGT GCCAGTAATA CCAAACAAAC GGGTTACGAA GAAAAAATTA ACTGGTTGCG TAAAATTTTA CAGTGGCAAG AAGATGTCGC TGAAAGTGGT AATTTGGTTG ACGAAGTCCG TAGCCAAGTA TTTGAAGACC GAGTCTATGT ATTTACCCCA AGTGGTGAAG TTGTTGACTT ACCTTTAGGC TCAACTGTAC TCGACTTTGC TTATTATATT CACTCTCAAG TGGGTCATAA ATGTATTGGT GCAAAAGTCG ACGGCCGCAT TGTGCCATTC ACGTACCAAG TTGAAACGGG TGAGCGCATT GAGATTATCA CTTCAAAAAC GCCTAACCCA AAACGTGACT GGCTCAATCT TAATTTAGGC TATATCAAGT CGTCTCGTTC GCGTTCAAAA ATTCAACACT GGTTTAAGCA ACAAGACCGC GATAAAAATA TTGCCGCGGG TAAAGAGATG CTTGAGTCTG AATTAGCCCG AGTAGGTCTT AAAATTAAAG ATGCAGCAGT GGCGGTAGAG CGCTTTAATT TAAACACTAT GGATGACATG CTAGCAGCCA TCGGTGGGGG TGATTTACGC TTAAATCAAG TGGTTAACTT TACCGATACC AAAATTCGCA AAGTAGAAGA CACTGACGAA AACTTACTTG AAGATATTAT AAAGAAAGCG TCGCATAAGC CTAAAAAGTC GAGTAAAGGC CAAGTCGAAG TTAATGGTGT GGGTAATTTA ATGAGCCACA TTGCGCGTTG TTGCCAACCC GTTCCCGGCG ATGAAATATT TGGTTATATT ACTATGGGGC GGGGGATTTC TGTGCACCGT AGTGATTGCG AACAAGTGAA AGAATTAATG CGTGCTCACC CAGAACGCAG TGTCGATGTG ATTTGGGGTG AGAACTATTC TGGTGGTTAT CGTATTCGCG TTAGAGTACT TGCCCATGAT CGCAGTGGTT TATTACGAGA TTTAACCACA GTGCTAGCGG CGGAGAAATC CAATGTGATG GCGATGAGTT CATCTTCTGA TGTTAAGAGC CAAACCGCCA CCGTAGAGCT TGAACTTGAA TTGTATAATT TAGATGGTTT ATCACGGATT CTCGGTAAAC TGTCGCTCGT TGATGGTGTG ATTGAGTCGC GTCGATTATA A
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Protein sequence | MHTMPCAYGW MSVGHAAKEG FMVSVREAHF NTQAFQLDEW VARYLDDKDD AQKLLVLIQQ VEALPVKNKL AHTELLARAR EMIEILAPLN MDIETLQAAV LFLLFDAGVL NEEQILEQYG ENLARLVASV VTMNAIGALK VSQNSRDAEP QIDNIRKMLL AMVEDVRAVV IKLAERVCLL RAVKNADEET RVLLAREIAD IYAPLANRLG IGQLKWELED ISFRYLHPTV YKDIAKQLDG KRVDREVFID KFVTQLQQRL DSDDIRAKVY GRPKHIYSIW RKMKGKDLKF DELFDVRAVR IVTERLQDCY GALGVVHDLW HHIPREFDDY VANPKPNGYQ SIHTVVVGPE GKTVEIQIRT EAMHQDSELG VAAHWKYKEG ASNTKQTGYE EKINWLRKIL QWQEDVAESG NLVDEVRSQV FEDRVYVFTP SGEVVDLPLG STVLDFAYYI HSQVGHKCIG AKVDGRIVPF TYQVETGERI EIITSKTPNP KRDWLNLNLG YIKSSRSRSK IQHWFKQQDR DKNIAAGKEM LESELARVGL KIKDAAVAVE RFNLNTMDDM LAAIGGGDLR LNQVVNFTDT KIRKVEDTDE NLLEDIIKKA SHKPKKSSKG QVEVNGVGNL MSHIARCCQP VPGDEIFGYI TMGRGISVHR SDCEQVKELM RAHPERSVDV IWGENYSGGY RIRVRVLAHD RSGLLRDLTT VLAAEKSNVM AMSSSSDVKS QTATVELELE LYNLDGLSRI LGKLSLVDGV IESRRL
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