| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1048 |
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| Symbol | rumA |
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| ID | 4278213 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1233437 |
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| End bp | 1234804 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133816 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_749739 |
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| Protein GI | 114562226 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00366869 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAT TTTTCCAAGC AAAACCGAAC AAATCTAAGC AATTATCAGC AAAGTTAAGC
CTCAGTGTCA CTCAACTTGA CCATTTAGGT GCAGGCATAG CGCAACATCA AGGCAAAATA
GTGTTTATTC CGGGAGTGTT ACCGGGAGAG ACTGCTACGG TGCAATTTGT CGAACAAAAG
AAAAGCTACG CTAAAGCCAA GCTCATCTCT ATTGAGTCTG CATCGGTTAA TCGAATCAAA
CCTCATTGTC CACATTATCA ACAATGTGGC GGTTGTGATT TGCAGCACAT GGACACTAAT
GCGCAACGCG AGCATAAACA AACGGCTCTA GTCGATCTCA TCAGCAAGCT GTCGAGTGCT
AAAGCTATTG ATGCTGATAT TGTCGCTGAC CCTATAGTGG GTGAGGCGTG GCATTATAGA
CGACGCGCAA GATTGGCCAC ATTATTTGAT AAAAATACTC AACGGTTACA ACTTGGGTTT
CGCGCAGGAA ATAGCAATAA AATTGTTTCT ATTCAACAGT GCCCTGTGTT ATCTGAGTCA
TTGTCCGCTT TAATTACCCC ATTAGCGGCT AATTTAAATC AACTTAAAGC TAAGGCCAGT
TTAGGGCATG TTGAACTCAC CCAAGCTGAT AACGGTAATT TTGCGGTATT AAGAGTGACT
AAAGTGTTGC CAGCATCTGA TATTCGTTGG TTAACGGGGT TTGCCGAAAA GCACCAACTT
AACTTGTTAT TGCAAGATGA TGCTGGTCAA TTAACCCAAT TGTTTCCCTT GCTGCCAGCT
GGTGATGAAG CTATCGCGTT ACCTTATTAT CATCTTGCAC AGGAGGCTGT TCGTTGTTCA
TTCACTCCTG GTAATTTTGT CCAAGTTAAC GGTGCTATTA ATCAGGCCAT GGTCGATCAA
GCCATCGAAT GGTTAGACCC TCAATCTGGT GAGCGTATTT TAGATCTATT CTGTGGTGTG
GGTAATTTCA GTTTACCGTT GGCATTAAAG GCTGCAGAAG TCATTGGTGT TGAAGGTGTG
CCTGAAATGG TGCAACAAGC CAAGCAAAAC GCTATCGACA ACCAATTGGA TAATGTGACT
TTCTATCATG CGGATTTAAG TGCTGATCTT TCGACGCAAA CATGGTTAGG CAAAATTGAT
AAACTGTTGC TGGACCCTGC TCGAGCCGGT GCTTTTGAAA GTTTACAATG GTTACAGAAA
ATGCAACCTA AAAAAGTGGT GTATGTTTCA TGTAATCCGG CAAGTTTAGC GCGTGACAGT
AGTGTATTAT TAGCCAGTGG ATATCGAATT GCCCAAGTGG GATTAGTCGA TATGTTTCCA
CAGACACATC ATATTGAAGC CATGGTGTTA TTTGAATTAA ATATTTAA
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| Protein sequence | MAQFFQAKPN KSKQLSAKLS LSVTQLDHLG AGIAQHQGKI VFIPGVLPGE TATVQFVEQK
KSYAKAKLIS IESASVNRIK PHCPHYQQCG GCDLQHMDTN AQREHKQTAL VDLISKLSSA
KAIDADIVAD PIVGEAWHYR RRARLATLFD KNTQRLQLGF RAGNSNKIVS IQQCPVLSES
LSALITPLAA NLNQLKAKAS LGHVELTQAD NGNFAVLRVT KVLPASDIRW LTGFAEKHQL
NLLLQDDAGQ LTQLFPLLPA GDEAIALPYY HLAQEAVRCS FTPGNFVQVN GAINQAMVDQ
AIEWLDPQSG ERILDLFCGV GNFSLPLALK AAEVIGVEGV PEMVQQAKQN AIDNQLDNVT
FYHADLSADL STQTWLGKID KLLLDPARAG AFESLQWLQK MQPKKVVYVS CNPASLARDS
SVLLASGYRI AQVGLVDMFP QTHHIEAMVL FELNI
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