Gene Sfri_1030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1030 
Symbol 
ID4277844 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1213058 
End bp1214155 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content43% 
IMG OID638133798 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_749721 
Protein GI114562208 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.01532e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGTATTT ACATGATCAA CAAACTTGGC CAATGTCTTT TTTCAACTAC CGTATTGATG 
ATGGGATATA TTGGGTTTAT TCCCAATGGT ATTGCCACGC CCACACCTCC CCGCGCAGAA
AAAGTGGTTC CGGTCATCAC CGCCACCGTT GAACAGCATG AACTTTCGCA ATCAATTACC
TTAATCGGAA AACTGGCTGC TACTCACTCG GTAATGATAG CGCCACAAGT CGCAGGCAAA
ATAGATAGCA TAGCGGTCAC ATCCAACCAA TATGTCAATA AAGGCCAGGC TCTGCTGACG
CTTGATAACC GCAAAGCTAA AGCCAGCGTG ACCGAAGCTC AAGCTTATTA TCAAGATGAA
GTGCGTAAGC TTAATGAGTT TAACAAGTTG ATTCACGTTA ACGCCATCAC TCAAACAGAA
ATAGAAGCTC AAAAGTCCAG TGTTGATATC GCTTTCGCTC GACTTGAATC AGCCAAAACA
GACCTTGATT ACCATACTCT AGCCGCGCCA TTTTCCGGAA ATACTGGTTT GGTTAACTTC
AGCCGAGGCA AGATGGTCAG TATCAATGAG TCACTATTAA CACTTGATGA TTTATCGGTG
TTACAGCTCG ATTTACAAGT TCCAGAACAT TATCTCTCTT TGTTAAGTAC AGGGATGTCG
GTAAACGCTT CCAGCAGAGC ATGGAATAAA ACCATTTTCA CTGGCAAGAT TATCGCTATT
GATCCACGCG TCAATTCACA AACACTTAAC CTCAATATTC GCAGTCAGTT TGATAATCAA
AAGGGTCAAT TAAAGCCCGG TATGATGATG TCAGCAACAC TGGTATTTCC CAGCGTGTCT
TCTCCTATTG TTCCGGTACA AGCACTTGAA TATTCTGGTA CCAAACGTTA TGTCTACGTA
ATCAACCAGG ACAACATCGC CACACGCACC GAAGTGATGT TAGGGGCCAG AATTGACGAT
CAAGTGTTAC TCGAATCTGG CATTAACATC GGCGACCACA TCGTCGTCCA GGGGCTGGTA
AATATGCGTG ACGGTGTCAA AGTAAAAGAC GTAGCTAAGC AAAATAAAAC AAGCCCTGTT
AAACAGGAGC AACAATAA
 
Protein sequence
MCIYMINKLG QCLFSTTVLM MGYIGFIPNG IATPTPPRAE KVVPVITATV EQHELSQSIT 
LIGKLAATHS VMIAPQVAGK IDSIAVTSNQ YVNKGQALLT LDNRKAKASV TEAQAYYQDE
VRKLNEFNKL IHVNAITQTE IEAQKSSVDI AFARLESAKT DLDYHTLAAP FSGNTGLVNF
SRGKMVSINE SLLTLDDLSV LQLDLQVPEH YLSLLSTGMS VNASSRAWNK TIFTGKIIAI
DPRVNSQTLN LNIRSQFDNQ KGQLKPGMMM SATLVFPSVS SPIVPVQALE YSGTKRYVYV
INQDNIATRT EVMLGARIDD QVLLESGINI GDHIVVQGLV NMRDGVKVKD VAKQNKTSPV
KQEQQ