| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1004 |
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| Symbol | |
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| ID | 4278378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1175056 |
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| End bp | 1176273 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133772 |
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| Product | phosphopentomutase |
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| Protein accession | YP_749695 |
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| Protein GI | 114562182 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1015] Phosphopentomutase |
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| TIGRFAM ID | [TIGR01696] phosphopentomutase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.490105 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACGTA CTTTTATCTT AATGCTCGAC TCTTTTGGTG TTGGTGCTGC TACCGACGCC
GATAAGTTTG GTGACGTTGG CTCAGATACT TTTGGTCACA TCGCGCAAGC CTGTGCTGAC
GGCAAAGCGG ATATCGGCCG TCAAGGTCCA TTGAAATTAC CTAATCTTGC TCGCTTTGGT
TTAGGCCATG CTGGTTTTGA AAGTACGGGT AAATTTGCTG CTGGATTTGC AGATAATGTC
GAAGTCATCG GTGCTTATGG TCATGCTGAC GAATTAAGCT CAGGCAAAGA CACTCCTAGT
GGTCACTGGG AAATGGCGGG TGTTCCTGTC CTTTATGAGT GGGGTTATTT TAGTGACTTA
ACCAATTCAT TTCCTAAAGA ACTCACAGAT AAAATCCTTG AACGCGCTGG TTTAGATGGG
TTTTTAGGTA ACTGCCATGC TTCAGGTACT CAAATTCTTG AAGAGTTAGG CGAAGAGCAC
ATGAAAACAG GCAAGCCTAT TTTCTATACC TCTGCTGACT CTGTATTCCA AATAGCATGT
CATGAAGAAA GTTTTGGTGT AGAAAATTTA TATAACTTGT GCAAAATTGC GCGTGAAGAG
TTAGAGCCTT ATAACATTGG TCGTGTAATT GCTCGACCAT TTGTTGGTAC TGGCCCTGCT
GATTTCGCTC GTACTGGTAA TCGTCATGAC TATGCGGTAT TACCACCAGC ACCTACAGTA
TTAGATAAGC TTAAAGATGC TGGCGGTGAA GTGGTTAGTA TCGGTAAAAT TTCTGATATA
TATGCTCACA GTGGTATTAC TCAACAATTT AAAGCGACAG GTCTCGAAGA GTTATTTGAC
GAAACCTTAG CGCAAATTAA ACGTGCTGGT GATAACACGA TTGTGTTTAC TAATTTCGTT
GATTTTGACT CTCATTATGG ACATCGTCGT GACACCGCCG GCTATGCTAA AGCACTTGAG
TACTTTGATT CTCGTTTACC GGAATTATTA GCGATTTTAC AACCTGAAGA TTTAGTCATT
TTCACTGCTG ATCATGGTTG TGATCCTACT TGGGTTGGCA CTGAACATAC TCGTGAACGT
GTGCCGGTAC TCGCCTATGG TGCAGGTTTA TCTGCAGGCT CACTAGGCCG TCGTAAGTCT
TTTGCTGATA TTGGTCAGTC TATTGCGAGT TATTTTAAGT TAGAACCGAT GAATTATGGT
GAATCTTTTA TTAATTAG
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| Protein sequence | MKRTFILMLD SFGVGAATDA DKFGDVGSDT FGHIAQACAD GKADIGRQGP LKLPNLARFG
LGHAGFESTG KFAAGFADNV EVIGAYGHAD ELSSGKDTPS GHWEMAGVPV LYEWGYFSDL
TNSFPKELTD KILERAGLDG FLGNCHASGT QILEELGEEH MKTGKPIFYT SADSVFQIAC
HEESFGVENL YNLCKIAREE LEPYNIGRVI ARPFVGTGPA DFARTGNRHD YAVLPPAPTV
LDKLKDAGGE VVSIGKISDI YAHSGITQQF KATGLEELFD ETLAQIKRAG DNTIVFTNFV
DFDSHYGHRR DTAGYAKALE YFDSRLPELL AILQPEDLVI FTADHGCDPT WVGTEHTRER
VPVLAYGAGL SAGSLGRRKS FADIGQSIAS YFKLEPMNYG ESFIN
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