Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1001 |
Symbol | |
ID | 4278375 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1171592 |
End bp | 1172431 |
Gene Length | 840 bp |
Protein Length | 279 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638133769 |
Product | nucleoside-specific channel-forming protein, Tsx |
Protein accession | YP_749692 |
Protein GI | 114562179 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3248] Nucleoside-binding outer membrane protein |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000000919402 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAATG TAAAAATGTT AGCTTTAGCG GGTGCAACAG TCGCTGCTAT TTCTGGTAAT GCTTTCGCTG CAGATCGTAC CGATCTTCAC GCTACTGATT ACAAATGGTT GCAGTTTAAT GCTATGTACT CTATTGGCGA AAAGCCAGAT AACCCAGCTT CTGGTGATCA ACATAACTAC TTAGAAATGG AGTTTGGTGG TCGTTCTGGT GTTGTTGATC TTTATGGTTA TGTTGATGTG TTCAACTTAG CAAATGAATC TACTGACAAT GGTGACAAAA ATCCTGGTTC AGGCACTAGT AAATTGTTCA TGAAATTTGC TCCACGTTTC TCTATCGATG CGATTACTGG TAAAGATTTA TCTTTTGGTC CAATCCAAGA AGTATATTTC TCAACCTTGT TCAACTGGGA TGGTCTTAAC GGCGAAGGCG TTAACTCTAC ATTCTGGGGT GTTGGTGCTG ATGTAAACGT ACCTTGGTTA GGCAAAACTG GTATGAACCT TTATGGTTAC TACGACATGA ACGCTAAAGA GTGGAACGGA TATCAGTTCT CAGCTAACTG GTTCAAGCCT TTCTACTTCT TCGACAACAA GAGCTTCTTA TCATTCCAAG GTTATATCGA TTACCAATTT GGTGCTGATG AAGACGACAA CATGTTCGTT CCTAAGACTT CAAGCGGTGG TAACATCTTC TTTGGTCTAT ACTGGCACTC AGATCGTTAC GCGCTTGGTT ATGGCTTAAA AGGCTTCAAA GACGTATACC TACTTGAAGA TGAAGGCGGT TTGGTTGGCC TAGAATCTAC TGGTTGGTCA CATTACCTAT CTGCAACTTA CAAGTTCTAA
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Protein sequence | MKNVKMLALA GATVAAISGN AFAADRTDLH ATDYKWLQFN AMYSIGEKPD NPASGDQHNY LEMEFGGRSG VVDLYGYVDV FNLANESTDN GDKNPGSGTS KLFMKFAPRF SIDAITGKDL SFGPIQEVYF STLFNWDGLN GEGVNSTFWG VGADVNVPWL GKTGMNLYGY YDMNAKEWNG YQFSANWFKP FYFFDNKSFL SFQGYIDYQF GADEDDNMFV PKTSSGGNIF FGLYWHSDRY ALGYGLKGFK DVYLLEDEGG LVGLESTGWS HYLSATYKF
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