Gene Sfri_1001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1001 
Symbol 
ID4278375 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1171592 
End bp1172431 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content41% 
IMG OID638133769 
Productnucleoside-specific channel-forming protein, Tsx 
Protein accessionYP_749692 
Protein GI114562179 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3248] Nucleoside-binding outer membrane protein 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 



Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000919402 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATG TAAAAATGTT AGCTTTAGCG GGTGCAACAG TCGCTGCTAT TTCTGGTAAT 
GCTTTCGCTG CAGATCGTAC CGATCTTCAC GCTACTGATT ACAAATGGTT GCAGTTTAAT
GCTATGTACT CTATTGGCGA AAAGCCAGAT AACCCAGCTT CTGGTGATCA ACATAACTAC
TTAGAAATGG AGTTTGGTGG TCGTTCTGGT GTTGTTGATC TTTATGGTTA TGTTGATGTG
TTCAACTTAG CAAATGAATC TACTGACAAT GGTGACAAAA ATCCTGGTTC AGGCACTAGT
AAATTGTTCA TGAAATTTGC TCCACGTTTC TCTATCGATG CGATTACTGG TAAAGATTTA
TCTTTTGGTC CAATCCAAGA AGTATATTTC TCAACCTTGT TCAACTGGGA TGGTCTTAAC
GGCGAAGGCG TTAACTCTAC ATTCTGGGGT GTTGGTGCTG ATGTAAACGT ACCTTGGTTA
GGCAAAACTG GTATGAACCT TTATGGTTAC TACGACATGA ACGCTAAAGA GTGGAACGGA
TATCAGTTCT CAGCTAACTG GTTCAAGCCT TTCTACTTCT TCGACAACAA GAGCTTCTTA
TCATTCCAAG GTTATATCGA TTACCAATTT GGTGCTGATG AAGACGACAA CATGTTCGTT
CCTAAGACTT CAAGCGGTGG TAACATCTTC TTTGGTCTAT ACTGGCACTC AGATCGTTAC
GCGCTTGGTT ATGGCTTAAA AGGCTTCAAA GACGTATACC TACTTGAAGA TGAAGGCGGT
TTGGTTGGCC TAGAATCTAC TGGTTGGTCA CATTACCTAT CTGCAACTTA CAAGTTCTAA
 
Protein sequence
MKNVKMLALA GATVAAISGN AFAADRTDLH ATDYKWLQFN AMYSIGEKPD NPASGDQHNY 
LEMEFGGRSG VVDLYGYVDV FNLANESTDN GDKNPGSGTS KLFMKFAPRF SIDAITGKDL
SFGPIQEVYF STLFNWDGLN GEGVNSTFWG VGADVNVPWL GKTGMNLYGY YDMNAKEWNG
YQFSANWFKP FYFFDNKSFL SFQGYIDYQF GADEDDNMFV PKTSSGGNIF FGLYWHSDRY
ALGYGLKGFK DVYLLEDEGG LVGLESTGWS HYLSATYKF