| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0994 |
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| Symbol | |
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| ID | 4278368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1161509 |
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| End bp | 1163545 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133762 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_749685 |
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| Protein GI | 114562172 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.031573 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGCCC GTTTTAAGTC TCTTACATGG AAACAAACAA ACTTAGTGGT ATTTACTGCT
TTGTTTTTTG CAATTGCCAT CTTTATAGTA GAAATTGCGT TTATGGTCAT TACGACTAAT
CAACAGCTCA CTGCAGCACA GCAAGAACTG CTAAATTCCG TAGAACAAAC CACCACCAAT
GCAGTATGGT CGTTAGATGA CAAACTTGCT AGTCAAACAC TCGAAGGTAT TATCAAAGTC
GATAATGTCG GTTCAGCGGT CATTGAGCTT GATGATGGTT CATTATTTGT GTCTGAGGCC
AATGAATCAG ATGAATTCTC TAATAATTAC ATATCCTTAA GTAATCGCCT TTTTGGTGAA
AGAAAAGAAA TTTCCCGTTC GCTGTATCGT CCGTTCTATT TTGAAGGCAA TAAACAACAG
CAACTCATTG GCACACTAAC CATTTTTTAC GACACTCAAA AACTCACCAC AAAACTTTTT
AGCCAACTAC AACTTGGGCT AATAGCAACA TTAGCTCGTG CATTATTACT AACACTTGTA
CTAACAGTGG TGTTTCATCG TTTTCTAACA CAACCTATCG CACGTATTAG TGAAGCTATC
GATAAAATTG ACCCAGATTA TCCAGATGAA AACTTGTTGC CTATGTCTCA AGCCCATAAA
GATGATGAAT TAGGGCTCGT TACCAGTAAA TTTAATCAAA TTTTATTACA ATTTAGTCAG
ACTCAAAATA AACTGCGCAA GATGGCGACG CGAGACCCAT TAACTGGTTT ACCAAACCGA
ACCTTATTAT TAGAAACACT CAATGTGACG ATTCAACGAT CACGAGTTCA TAAACGAAAT
TTTGCTCTAC TCTTTATCGA TTTAGATCGG TTTAAAAACG TCAATGACTC TTTAGGCCAT
GCATTAGGGG ATCAATTCCT CGCACGAATC GCACGTATTT TAGAAAGAGT GGTCGGTGAT
CGAGGCAGCG TGGTGCGTTT AGGTGGCGAT GAATTCGTGA TTTTAGCCGA TGAAATACAA
ACCCCGGCAC AAGCAGCTGA TTTTGTAGAT AAGTTACTGA TCCAATTAAA TACTCCGATT
CAACTAAATG AGCATGCTAT CCATCCAGCG GCTTCTATCG GGATATCAAT ATATCCAGAA
GATGGTAACA CCGCAGAGGA TTTAATTCGT CATGCAGATA TTGCTATGTA CAGCGCTAAA
GCCGCTGGTT CTAATCAATG GTCGTTCTTT AAACAACAAA TGACAGAACG TGCAGCTGTG
AGATTACGTA CAGAAGCCTC GTTACACGAT GCGTTGAAAA ACAACGAATT TTTATTATAT
TTCCAACCTA AGTTTGATTT AAACACCAAT CAAGTCGTCG GATGTGAAGC ACTTATTCGC
TGGCAAAAAG ACGGTCGATT AATCAGCCCA ATGTCATTTA TCCCTGTTGC TGAAGAAACA
GGTATTATCA TTCCTATCGG ACGTTGGGTT ATCGAACAAA GCTGTAAAGT CATTAGGGAA
TGGCAACGAA AATACAATTA TGCGATTCCT ATTGCTGTTA ATGTGGCCTC GCAACAATTT
GCCGATGCCA GTTTAGTACC TGATATAAAG CAACTGGCAA TTCGTTATCA AATACGTCCA
GAATTGCTTG AAATAGAAAT AACAGAAACG TCACTGATGA ATGATGTTGA ACAAGCAATT
ACCAAATTGG AACAACTCAA GTCAGCTGGT TTTGGTATTG CGGTCGATGA CTTTGGTACT
GGGTATTCTT CATTATCATA TTTACGACAC TTGCCGATTA CCACGATGAA AATTGATCGT
GCATTTGTTA GCGATCTTCC AGAAGATAGC GCAATTGCGT CAACTATTTT AATGCTCGGA
CGCCAGCTTG ATTTGACCAT TGTTGCTGAA GGTATTGAAA ATATTCAACA GCAGGAATGG
CTCAAAGAAA ATCAATGTGA AATCGGCCAA GGTTTTTACT TCAGCCAGCC ATTACCAATA
GAAGAGTTTG AAGAGAAATA TATTGCCTGT AATACTGCGA AAATAATGCA CGTTTAA
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| Protein sequence | MTARFKSLTW KQTNLVVFTA LFFAIAIFIV EIAFMVITTN QQLTAAQQEL LNSVEQTTTN
AVWSLDDKLA SQTLEGIIKV DNVGSAVIEL DDGSLFVSEA NESDEFSNNY ISLSNRLFGE
RKEISRSLYR PFYFEGNKQQ QLIGTLTIFY DTQKLTTKLF SQLQLGLIAT LARALLLTLV
LTVVFHRFLT QPIARISEAI DKIDPDYPDE NLLPMSQAHK DDELGLVTSK FNQILLQFSQ
TQNKLRKMAT RDPLTGLPNR TLLLETLNVT IQRSRVHKRN FALLFIDLDR FKNVNDSLGH
ALGDQFLARI ARILERVVGD RGSVVRLGGD EFVILADEIQ TPAQAADFVD KLLIQLNTPI
QLNEHAIHPA ASIGISIYPE DGNTAEDLIR HADIAMYSAK AAGSNQWSFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKFDLNTN QVVGCEALIR WQKDGRLISP MSFIPVAEET
GIIIPIGRWV IEQSCKVIRE WQRKYNYAIP IAVNVASQQF ADASLVPDIK QLAIRYQIRP
ELLEIEITET SLMNDVEQAI TKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
AFVSDLPEDS AIASTILMLG RQLDLTIVAE GIENIQQQEW LKENQCEIGQ GFYFSQPLPI
EEFEEKYIAC NTAKIMHV
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