| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0992 |
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| Symbol | truB |
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| ID | 4278366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1159014 |
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| End bp | 1159967 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133760 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_749683 |
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| Protein GI | 114562170 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.358844 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTCGTC GCCCTAAAGG TCGCTTCATC GACGGAATCG TATTACTCGA TAAAGATACT
GGCATGAGCT CTAATTTTGC CCTGCAAAGA GTAAAGCGTT TTTTTAATGC CAATAAAGCT
GGCCATACAG GTGCTTTAGA CCCGTTAGCA ACAGGTATGT TGCCTATTTG CCTGGGAGAA
GCGACTAAGT TCTCTCAGCA TTTATTAGAT TCGGATAAGC GCTACCTGGT GACAGCTAAA
TTGGGTCAAC GTACTGACAC AAGTGATTCA GATGGGGAAG TCGTGCAAAC GCGCCCTGTT
AACGTTACTC AAGCATTACT TGATGAAAAG CTCGCATTTT TTCGAGGAAC CACTCAGCAA
ATACCGTCAA TGTATTCGGC ATTAAAATAC CAAGGTCAGC CTTTGTATAA ATATGCTCGT
GAGGGGATTG AAGTTCCACG TGAGTCGCGA CCTATTACCG TGTTTGAGCT AAATTTTATT
AAGCTTGAAG GTGATGAATT AACCTTAGAC ATTCATTGTT CTAAAGGGAC TTACATTCGC
ACCATTATTG ATGATTTAGG TGAAATGCTT GGTTGTGGAG CACATGTGGT TATGTTGCGT
CGTACTCAAG TCGCCGAATA TCCTTATGAA AAAATGGTAA CGCTTGCCCA ATTAGAAGCG
CTACTTGAAC AAGCTCATAG ACAAGATGTT GCTCCTCAGA CCCTAATGGA TCCGTTATTG
TTACCAATGG ATACTGCAGT GGCTAAATTT GCTGAAATTA ACTTGCCTGA GGCGATGCTA
TATTACGTCA TGCAAGGGCA AGCAATTCAA GCAGCGGGAC TTAAGCCTGA TGAATTAGTG
CGGATCACTA TTGGCGATGA ACGCCGATTT GTTGGTATGG GTATCATGAA TGATGATGGT
TTATTAGCAC CCAAACGTTT AATTGTGATC CACGATAATG ATGCCGCTGA GTAG
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| Protein sequence | MARRPKGRFI DGIVLLDKDT GMSSNFALQR VKRFFNANKA GHTGALDPLA TGMLPICLGE
ATKFSQHLLD SDKRYLVTAK LGQRTDTSDS DGEVVQTRPV NVTQALLDEK LAFFRGTTQQ
IPSMYSALKY QGQPLYKYAR EGIEVPRESR PITVFELNFI KLEGDELTLD IHCSKGTYIR
TIIDDLGEML GCGAHVVMLR RTQVAEYPYE KMVTLAQLEA LLEQAHRQDV APQTLMDPLL
LPMDTAVAKF AEINLPEAML YYVMQGQAIQ AAGLKPDELV RITIGDERRF VGMGIMNDDG
LLAPKRLIVI HDNDAAE
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