| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0980 |
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| Symbol | secF |
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| ID | 4278197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1145845 |
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| End bp | 1146768 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133746 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_749671 |
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| Protein GI | 114562158 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00161117 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACTCAA CTCAAACAAA TTATTCAACA GACAAGCTGC AATACTTAAC TAAGTGGCGT
TACGCATCGA GTCTAATCTC GATTGTATTA ATGCTGTTAT CATTAACCGT TATAGGAGTA
AAAGGGTTTA ATTGGGGCTT AGATTTTACA GGCGGTGTGG TTACTGAAAT TCAAGTGGAC
CATCGCATCA CTGCCAGTGA GATACAGCCA TTGATGACCG CCGCTTACAA ACAAGATGTT
AGTGTTATTT CAGCCAGTGA ACCAGGCCGT TGGGTATTAC GATATGCCAA TATACCAGAT
GAGAATCAAC GCCCAGAACT GGCTGAAGTA TTAGCGCCAT TAAATACGGA TATCAACGTG
TTAAACAGCA GTATCGTTGG GCCACAAGTG GGGCAAGAGT TGGTTGAGCA AGGTGGTTTA
GCCTTACTCG TCGCTATGCT ATGCATTATG GGGTATCTAA GCTTTCGCTT TGAATGGCGT
TTAGCTTCAG GCGCTCTGTT TGCTTTGGTA CATGATGTAG TGTTTGTGTT AGCTTTTTTC
GCGTTAAGCC AAATGGAATT TAATTTAACT GTATTAGCCG CGATAATGGC AATTTTAGGG
TATTCGCTCA ATGACTCAAT TATTATTGCT GACAGGATCC GGGAGCAGTT AGTGGCTAAA
CCACAGTGGA ATATAACTGA TATTAACAAC TTAGCGATTA AATCAACCTT TTCCAGAACC
ATGGTCACAT CAGGCACTAC GTTAATAACA GTTGTGGCTT TATGGATTTT GGGTGGGGCA
CCGCTTGAAG GTTTTTCTAT TGCGATGTTT ATTGGTATTT TAACCGGTAC TTGGTCATCG
GTTTCAATTG GAGCTACCTT GCCAGAGTTT CTAGGCTTAA AGGCTGAGCA TTATCAAGTT
ATCCCAATAC CTGATTATCC CTGA
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| Protein sequence | MNSTQTNYST DKLQYLTKWR YASSLISIVL MLLSLTVIGV KGFNWGLDFT GGVVTEIQVD
HRITASEIQP LMTAAYKQDV SVISASEPGR WVLRYANIPD ENQRPELAEV LAPLNTDINV
LNSSIVGPQV GQELVEQGGL ALLVAMLCIM GYLSFRFEWR LASGALFALV HDVVFVLAFF
ALSQMEFNLT VLAAIMAILG YSLNDSIIIA DRIREQLVAK PQWNITDINN LAIKSTFSRT
MVTSGTTLIT VVALWILGGA PLEGFSIAMF IGILTGTWSS VSIGATLPEF LGLKAEHYQV
IPIPDYP
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