Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0955 |
Symbol | |
ID | 4277683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1116063 |
End bp | 1117076 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638133721 |
Product | ApbE family lipoprotein |
Protein accession | YP_749646 |
Protein GI | 114562133 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0462769 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGTAA ATTCAATCAA GTTATTGCTA TTGCCAGCGT TGTTGTTATT GGTGAGCGCC TGCAGTTCAC CAGAGCCTAT TATTTCATTA TCTGGTAGTA CCATGGGTAC CACTTATCAT ATTAAAGTGG TCAACAGTGA CCGCTTACCT GAAGCGCAGC TACTACAAGC TGAAATTGAC ATGGCATTAG AAGTCGTAAA CGATCAAATG TCGACTTACC GTTCAGACTC GGAACTGTCT AAGTTCAATC AATTACAAGT TCAACAAAGC GTTAAAGTAT CCGCTGATAC CATTAAGGTT ATCGAAGAAG GTATGCGTCT TTATCAGGAG ACTGATGGGG CATTAGATAT CACATTAGGA CCAGTGGTTA ATTTGTGGGG CTTTGGTCCC GATAAACGAC CGACAACCAT CCCGACTCAA GCTCAAATCG ATAACGCTAA AGCTAAGATG GGCATCAAAG AATTGTCGAT AAAAGGCTTA ACATTAACTA AGCATAATGC AGACCTGTAT GTTGACTTAT CTTCTATAGC AAAAGGTTTT GGCGTTGATA AGATTGCCGC GATATTAGAC AAATATCATG TATCTGGATA CTTAGTTGAA ATAGGTGGTG AGCTTAATGT TAAAGGTACT AAGGATGACA ATACCCCATG GCGAGTGGCT GTAGAGCAAC CTACTACAGA AGGCCAAGCC GTTCAGCAAG TGATTGAGCC TGGGACAATG TCATTAGCAA CATCAGGTGA TTACCGTAAC TTTTATCAAG AGAATGGCGA ACGTTTTTCA CATTTAATTG ATCCTCGTAA CGGTTATCCT ATTAAGCATC AACTTGCCTC TGCAACCGTG TTACACTCTA GTTGTATGAC CGCAGATGGA TATGCCACCG CGATGATGGT GTTAGGAACT GAGGCTTCAT TGGCACTTGC TAAAGAGAAA AATTTAGCAA TAATGTTAAT TGAGAAGCAA GAACAGGGTT ATCAGGTCTA TTACAGCGAT GCGTTTAAAT CGTATGTTAA GTAG
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Protein sequence | MTVNSIKLLL LPALLLLVSA CSSPEPIISL SGSTMGTTYH IKVVNSDRLP EAQLLQAEID MALEVVNDQM STYRSDSELS KFNQLQVQQS VKVSADTIKV IEEGMRLYQE TDGALDITLG PVVNLWGFGP DKRPTTIPTQ AQIDNAKAKM GIKELSIKGL TLTKHNADLY VDLSSIAKGF GVDKIAAILD KYHVSGYLVE IGGELNVKGT KDDNTPWRVA VEQPTTEGQA VQQVIEPGTM SLATSGDYRN FYQENGERFS HLIDPRNGYP IKHQLASATV LHSSCMTADG YATAMMVLGT EASLALAKEK NLAIMLIEKQ EQGYQVYYSD AFKSYVK
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