Gene Sfri_0955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0955 
Symbol 
ID4277683 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1116063 
End bp1117076 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content41% 
IMG OID638133721 
ProductApbE family lipoprotein 
Protein accessionYP_749646 
Protein GI114562133 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0462769 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGTAA ATTCAATCAA GTTATTGCTA TTGCCAGCGT TGTTGTTATT GGTGAGCGCC 
TGCAGTTCAC CAGAGCCTAT TATTTCATTA TCTGGTAGTA CCATGGGTAC CACTTATCAT
ATTAAAGTGG TCAACAGTGA CCGCTTACCT GAAGCGCAGC TACTACAAGC TGAAATTGAC
ATGGCATTAG AAGTCGTAAA CGATCAAATG TCGACTTACC GTTCAGACTC GGAACTGTCT
AAGTTCAATC AATTACAAGT TCAACAAAGC GTTAAAGTAT CCGCTGATAC CATTAAGGTT
ATCGAAGAAG GTATGCGTCT TTATCAGGAG ACTGATGGGG CATTAGATAT CACATTAGGA
CCAGTGGTTA ATTTGTGGGG CTTTGGTCCC GATAAACGAC CGACAACCAT CCCGACTCAA
GCTCAAATCG ATAACGCTAA AGCTAAGATG GGCATCAAAG AATTGTCGAT AAAAGGCTTA
ACATTAACTA AGCATAATGC AGACCTGTAT GTTGACTTAT CTTCTATAGC AAAAGGTTTT
GGCGTTGATA AGATTGCCGC GATATTAGAC AAATATCATG TATCTGGATA CTTAGTTGAA
ATAGGTGGTG AGCTTAATGT TAAAGGTACT AAGGATGACA ATACCCCATG GCGAGTGGCT
GTAGAGCAAC CTACTACAGA AGGCCAAGCC GTTCAGCAAG TGATTGAGCC TGGGACAATG
TCATTAGCAA CATCAGGTGA TTACCGTAAC TTTTATCAAG AGAATGGCGA ACGTTTTTCA
CATTTAATTG ATCCTCGTAA CGGTTATCCT ATTAAGCATC AACTTGCCTC TGCAACCGTG
TTACACTCTA GTTGTATGAC CGCAGATGGA TATGCCACCG CGATGATGGT GTTAGGAACT
GAGGCTTCAT TGGCACTTGC TAAAGAGAAA AATTTAGCAA TAATGTTAAT TGAGAAGCAA
GAACAGGGTT ATCAGGTCTA TTACAGCGAT GCGTTTAAAT CGTATGTTAA GTAG
 
Protein sequence
MTVNSIKLLL LPALLLLVSA CSSPEPIISL SGSTMGTTYH IKVVNSDRLP EAQLLQAEID 
MALEVVNDQM STYRSDSELS KFNQLQVQQS VKVSADTIKV IEEGMRLYQE TDGALDITLG
PVVNLWGFGP DKRPTTIPTQ AQIDNAKAKM GIKELSIKGL TLTKHNADLY VDLSSIAKGF
GVDKIAAILD KYHVSGYLVE IGGELNVKGT KDDNTPWRVA VEQPTTEGQA VQQVIEPGTM
SLATSGDYRN FYQENGERFS HLIDPRNGYP IKHQLASATV LHSSCMTADG YATAMMVLGT
EASLALAKEK NLAIMLIEKQ EQGYQVYYSD AFKSYVK