Gene Sfri_0946 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0946 
Symbol 
ID4277674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp1105633 
End bp1106757 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content44% 
IMG OID638133712 
ProductTRAP dicarboxylate transporter- DctP subunit 
Protein accessionYP_749637 
Protein GI114562124 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAAGG TGATACAAAC CTGCTGGATA CTAGGCTTAA CGTTATTGTT AGGCTGTCAA 
CAAGAAACGC CTTCAAAGCT AAGTTCTGTT CCGCAAAAAG ATTTTATTTC TCACCAAGTT
ATTGAATGGC GTTTAGCCAC GTCATGGCCA AAAAACTTGC CCGGTTTGGG TATGGCTCCG
GAACGATTTG CCCAATTAGT CGAGCAAATG TCTAACGGTC GTTTAGTGAT TACTGTTTAT
GGCGCTGGCG AATTAATGCC TGCATTGTCG GTGTTTGACG GCGTAAGTAA TGGCACGATA
GAAATGGCCC ATAGCGCATC ATATTATTGG AAAGGTAAAG CGCCTGCCGC CCAGTTTTTC
TCATCAATAC CATTTGGTTT AAATGCACAA CAGATGAATG CATGGCTTCA CTACGGCGGT
GGCATGGAAT TATGGGAGGA AGTTTATCAA CCTTTTGGTG TATTACCGCT TGCAGGGGGA
AATACCGGCA TGCAAATGGG TGGCTGGTTT AATAAAATCA TAGCATCCCC AGAAGACTTT
AAAGGGCTCA AAATGCGCTT GCCGGGCTTA GGCGGTGAGG TGCTCAAGAA GCTCGGTGGC
GTTCCCGTTG ATGCACTTGC TGGCAGAGAA TTATACGGCG CACTGCAAAC TGGCGCAATT
GACGCTGCTG AATGGGTTGG GCCTTATAAT GATTTATCGC TAGGGCTGCA TCAGGTGGCT
AAATACTACT ATTATCCTGG CTGGCATGAA CCGGGTTCAA CGATGGAGTT TTTGATTAAC
CAACAGGCCT TTTCGACTCT TCCCAATGAT TTGAAAATGA TTGTTAAAGT CGCTGCAAGA
GCCATCAATC AGGATATGTT AGATGATTAT ACTCAAGGTC ATATTGCCGC GATGGATGTA
TTGCTTAACG AGCATAATGT GCAAGTTAAA CTTTTTCCCA ACACAGTGAT CCGCGCATTA
AAATATGCAA GAGATGATGT GCTTAACAGC GAAGCGGCTA AAGACCCGTT ATTCAATAAA
GTACTTGAGT CTTACATGGC TAACGAGAAG TCTGTAAAGC GCTATTTTAG TTACACAGAA
GATGCCTTGA GTCGCTTTGA GTTAGACGAC AAAAATCAAC CGTAA
 
Protein sequence
MSKVIQTCWI LGLTLLLGCQ QETPSKLSSV PQKDFISHQV IEWRLATSWP KNLPGLGMAP 
ERFAQLVEQM SNGRLVITVY GAGELMPALS VFDGVSNGTI EMAHSASYYW KGKAPAAQFF
SSIPFGLNAQ QMNAWLHYGG GMELWEEVYQ PFGVLPLAGG NTGMQMGGWF NKIIASPEDF
KGLKMRLPGL GGEVLKKLGG VPVDALAGRE LYGALQTGAI DAAEWVGPYN DLSLGLHQVA
KYYYYPGWHE PGSTMEFLIN QQAFSTLPND LKMIVKVAAR AINQDMLDDY TQGHIAAMDV
LLNEHNVQVK LFPNTVIRAL KYARDDVLNS EAAKDPLFNK VLESYMANEK SVKRYFSYTE
DALSRFELDD KNQP