Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0946 |
Symbol | |
ID | 4277674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1105633 |
End bp | 1106757 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133712 |
Product | TRAP dicarboxylate transporter- DctP subunit |
Protein accession | YP_749637 |
Protein GI | 114562124 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCAAGG TGATACAAAC CTGCTGGATA CTAGGCTTAA CGTTATTGTT AGGCTGTCAA CAAGAAACGC CTTCAAAGCT AAGTTCTGTT CCGCAAAAAG ATTTTATTTC TCACCAAGTT ATTGAATGGC GTTTAGCCAC GTCATGGCCA AAAAACTTGC CCGGTTTGGG TATGGCTCCG GAACGATTTG CCCAATTAGT CGAGCAAATG TCTAACGGTC GTTTAGTGAT TACTGTTTAT GGCGCTGGCG AATTAATGCC TGCATTGTCG GTGTTTGACG GCGTAAGTAA TGGCACGATA GAAATGGCCC ATAGCGCATC ATATTATTGG AAAGGTAAAG CGCCTGCCGC CCAGTTTTTC TCATCAATAC CATTTGGTTT AAATGCACAA CAGATGAATG CATGGCTTCA CTACGGCGGT GGCATGGAAT TATGGGAGGA AGTTTATCAA CCTTTTGGTG TATTACCGCT TGCAGGGGGA AATACCGGCA TGCAAATGGG TGGCTGGTTT AATAAAATCA TAGCATCCCC AGAAGACTTT AAAGGGCTCA AAATGCGCTT GCCGGGCTTA GGCGGTGAGG TGCTCAAGAA GCTCGGTGGC GTTCCCGTTG ATGCACTTGC TGGCAGAGAA TTATACGGCG CACTGCAAAC TGGCGCAATT GACGCTGCTG AATGGGTTGG GCCTTATAAT GATTTATCGC TAGGGCTGCA TCAGGTGGCT AAATACTACT ATTATCCTGG CTGGCATGAA CCGGGTTCAA CGATGGAGTT TTTGATTAAC CAACAGGCCT TTTCGACTCT TCCCAATGAT TTGAAAATGA TTGTTAAAGT CGCTGCAAGA GCCATCAATC AGGATATGTT AGATGATTAT ACTCAAGGTC ATATTGCCGC GATGGATGTA TTGCTTAACG AGCATAATGT GCAAGTTAAA CTTTTTCCCA ACACAGTGAT CCGCGCATTA AAATATGCAA GAGATGATGT GCTTAACAGC GAAGCGGCTA AAGACCCGTT ATTCAATAAA GTACTTGAGT CTTACATGGC TAACGAGAAG TCTGTAAAGC GCTATTTTAG TTACACAGAA GATGCCTTGA GTCGCTTTGA GTTAGACGAC AAAAATCAAC CGTAA
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Protein sequence | MSKVIQTCWI LGLTLLLGCQ QETPSKLSSV PQKDFISHQV IEWRLATSWP KNLPGLGMAP ERFAQLVEQM SNGRLVITVY GAGELMPALS VFDGVSNGTI EMAHSASYYW KGKAPAAQFF SSIPFGLNAQ QMNAWLHYGG GMELWEEVYQ PFGVLPLAGG NTGMQMGGWF NKIIASPEDF KGLKMRLPGL GGEVLKKLGG VPVDALAGRE LYGALQTGAI DAAEWVGPYN DLSLGLHQVA KYYYYPGWHE PGSTMEFLIN QQAFSTLPND LKMIVKVAAR AINQDMLDDY TQGHIAAMDV LLNEHNVQVK LFPNTVIRAL KYARDDVLNS EAAKDPLFNK VLESYMANEK SVKRYFSYTE DALSRFELDD KNQP
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