Gene Sfri_0847 details

Gene Information

• Locus tag: Sfri_0847
• ID: 4276944
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 994624
• End bp: 996486
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638133613
• Product: methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_749538
• Protein GI: 114562025
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.566037
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTATTC GATCGAAACT TATTTTAAGT TCGCTCATTT CAATCTCCTC AGTACTCGCG 
ATGTTCGGGT TACAAAATTA TTCTGAATCA GTCCTGTTGG AATTATCAAC AGCATCAAAC 
AGTATTGTTG AAATTGAAAA GAAAGTGCTT GAGTTACGTA CTGAAGAAAA GGATTTTCTC 
CATCGTGCAG ACACTGTTTA TATTGAAAAA TTTAAACATA GCATGGATGA TATTGTGGTT 
TATATGGCCG AAGTGCGTGT CGCGCTAGAG CATCAAGGCA TGAATGTCGA TGCTTTAGAT 
CATTTTAAAA AGAACCTCAA CGATTATAAA ACGATATTCA ACGAGATTAT TGCCTTAAAA 
GTAGAGATAG GGCTAACTCC AGAGTCAGGT TTATATGGTG ATTTACGTTC AGCGGTTAAA 
AAAGTCGAAA TTGTGCTGAG TGATAATGCA GAGGATGCTT TGCTGGTGGC GATGCTACAG 
CTACGTCGAA GTGAGAAAGA CTTTATGCTC CGCCGTGACC CTAAATATAT ACAAGCTTTT 
GATGACGGAA TCGCCCGTTT TTTAACTCAA ATACAACAGT CTAATATAAT GTTTTCTCAA 
AAAGAGCTAT TGACTGCAGA TGTTAAAGAT TACCAAGTTA ACTTTAAAAA ATTAGTTGAT 
AAAGAAGTGC TATTTGGTTT AACGGACGAA GACGGTAAAA TGGCCGAGTT ACGTGAGAAA 
ATCCATCAAA CAGATAATGA TACCGTTACC CTACGTGAGG AAACGTTAGC CGAAATAGAG 
CATGGTAAAA AGCAGGCTTT TATTATTGGT TTAAGTATAT TTTTGTTAAT CGCTGCAGTG 
CTGTGTATTT TCACCTATTT AATTATTCGT AGCATTATTA AACCGGTACA AGATATAACC 
GATGTAATTT CGTCAATTGA AAAAAGTAAG GACTTATCAA TGCGTTGCGA TGAGTCAGGT 
AATGATGAAT TATCGAAAAT CGCCTATCAT TTCAACCAAA TGGTAATAAC GTTCCAAGAA 
TTGATCCAGC AAGTGGACGA GTCGGTTACA GCAATGAATG AGTCGTGCCA AGAGCTGTCT 
CGAAATGCAA TGACAGCTTC GGAAGGTGTG TTACGTCAGC TTAATGAAAC CGACATGGTG 
GCCACAGCCG TTACCGAAAT GGGGGCTACC ATTGACGAAA TTGCCAAAAA TACAGAACTG 
GCGGCCGGTA AAGCCAGTCA AACTCATGAG AACGCTCAAT CTGGTCAACA GGGTGTAGAA 
CTTACCGTTC AAAAAATCAC CCTGCTAGCT AAGCAATTAG CCGATTCAGC CTCAGTGGTT 
ACCGAACTTG AGCGAGACAG TGTCACGATT GGTAGCGTGC TTGATGTGAT TAGGGGCATT 
GCAGATCAAA CAAACTTATT AGCATTAAAC GCGGCGATTG AAGCAGCAAG AGCGGGGGAG 
CAAGGTCGTG GTTTTGCGGT TGTTGCCGAT GAGGTTCGTA CGCTAGCCTT AAGAACACAA 
ACGTCGACTC AAGAAATTTC CAGCATCATT TCAACCTTAC AATCCCGAAC TCATTCTATT 
GTTGAGCTTA TGCAAGAAAG TCAGCAACAA GGGCGAGAAA GTGCTGAACA AGCTGCCATC 
GCGGGTGAAG TATTACGCAC AATTACCAAT GACGTGACCA ATATTATGGA CATGAGTACT 
CAAATTGCTG CGGCAATTGA AGAGCAAAGT ATGGTAGCTG CAGAGGTGGG TAAAAACGTG 
GTAGTTATCC GTGATATTGC CGATGAATCA TCACAAGCGG CTGAAGAAAA TGCCGCGGCT 
TCTGAAGATG TAAGAATACG AGCCAAAGCA CTGCATGAAG CGGTTAGCCA GTTTAGAGTG 
TAA 

 

Protein sequence

MLIRSKLILS SLISISSVLA MFGLQNYSES VLLELSTASN SIVEIEKKVL ELRTEEKDFL 
HRADTVYIEK FKHSMDDIVV YMAEVRVALE HQGMNVDALD HFKKNLNDYK TIFNEIIALK 
VEIGLTPESG LYGDLRSAVK KVEIVLSDNA EDALLVAMLQ LRRSEKDFML RRDPKYIQAF 
DDGIARFLTQ IQQSNIMFSQ KELLTADVKD YQVNFKKLVD KEVLFGLTDE DGKMAELREK 
IHQTDNDTVT LREETLAEIE HGKKQAFIIG LSIFLLIAAV LCIFTYLIIR SIIKPVQDIT 
DVISSIEKSK DLSMRCDESG NDELSKIAYH FNQMVITFQE LIQQVDESVT AMNESCQELS 
RNAMTASEGV LRQLNETDMV ATAVTEMGAT IDEIAKNTEL AAGKASQTHE NAQSGQQGVE 
LTVQKITLLA KQLADSASVV TELERDSVTI GSVLDVIRGI ADQTNLLALN AAIEAARAGE 
QGRGFAVVAD EVRTLALRTQ TSTQEISSII STLQSRTHSI VELMQESQQQ GRESAEQAAI 
AGEVLRTITN DVTNIMDMST QIAAAIEEQS MVAAEVGKNV VVIRDIADES SQAAEENAAA 
SEDVRIRAKA LHEAVSQFRV