Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0831 |
Symbol | |
ID | 4278782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 975972 |
End bp | 977855 |
Gene Length | 1884 bp |
Protein Length | 627 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638133597 |
Product | diguanylate cyclase |
Protein accession | YP_749522 |
Protein GI | 114562009 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGAAAACAT CACTTCAGAT TCACTTTTTT ATTGCCATTT TTATAGCAAT ATTTTTTTTA CCTACATCAG CCTTTGCCGC TTATTACGAC AACGTCAAAG CTGATGCGAT CTATAAAAAA ATAGATTTAG CTGATTATGT TGATCAGGTT TCAGGTGAAG AGTTACTCAA CGAATATAAG CGGCTCATTG CCTCTGACGA TGAGATCCGT CAAAAACTCT ATGTCCGTTT ATACTGCTGG AACCAGCCTT CTACTACAGA TAGTGAACTT GCCAGCGCCA TTAAGTATGC AGAGCAACAA CTGCTGATAT ATTCAGTACC CTATCCATCA GCAATTCATA CTGATTTATT ATTATGTTTA GGTTATTACA AACAGTTTTC AGGTCAATTA GACGAAGCTC TTGACGATCT TTCTAATGCA ATAAATAACG CATACGAACT TGAAGATCCT CGACTTATCG CTGACGGCCG AAGCATTCGA GGGGCAATGC TGTCATATCA AGGCAACTAT TCATCTGCAT TAGAAGATTT AATTACATCG CAACAATTGT ATGAAAATCT TAATTTAACT TATTGGGCAA ATGATAACTT AAGTGAACTT GCTGCAAGTT ATCGGCGTTT TGGTGATGCT GAAACCGCTC TGAAATACCA AATAAAACTT GAACAAGCTT ACCTTAAGGC CAATCAACAA ATAGAAGCTG ATAATATCAA TAATCAGATC GCGTTTTCAC TTCTAGAGCT TGGGCGTATT GACGAGTCTA CTGCACGATT TAAACAGTCG CTTACCTTCT GGAAAACCCA AAAAGATAAC ATTGCTATTG CAGATGCCAA AACCAATATT GCAGGAAACC TGATTAAACT AGATAAAATA GATGAAGCAC TAGTGCTGTT AAAGGAAGCA GAAAAAGAAA TCCCAGTCAG TAATGATGGG CCGCATAGTT CATTAATGTT ATACCTAGCA CAAGTATATT TAGCTAAAAA TGAATTAGAT AAAGCCCTTG AATACAGTCA GCTTGCATCA ATTGATTTTA ACCGTGGTGG CAATCAACGC GGTGAAAATG AAAACATCTA TCTCAAAAGC GATATCTACC AAGCTAAAGG TGATATTGAA AATGCATTAA AAACATTACA AAAATTTATT AAAATGCACA TGGCACTTGA TAAGCAAAAT ATGTCTGATC GCAACTCAGA AATGCAAGCG CGCTTTAATA CCAACAAAAT TCAAACCGAA AACGAATGGT TAATACAACG CGACAAAGAT AAAGAGCAGC AGTTACAGAT TTTACAGCGT AACGAAAGCA TGCAAATTAT CATTATTATC TTAGTTGCGA TTATTTTAAT TATCGTATCA ATGTTTGCTT ACAAGCAAGT TATACGAAAA CAACTCTTTA GGCGTTTAGC CCTAACCGAT GAGCTGACTA AATTGGCCAA TAGACGTGAT ACCTATTCTC AGGGGCATTA CTTCTTAAAA TCATCCAAAC TATCAGGTAA GCCGTTTTCC ATTATCTCTT TTGATGCTGA TCATTTTAAA ATGGTCAACG ATACATTAGG CCATGATATG GGCGATAAAG TGCTAGTAAA GCTAGCGTCA ATTAGCGCAA GCATGATGCG CGATACCGAT GTTGTTGGAC GTGTTGGCGG TGAAGAATTT TTGATTTTAC TGCCTAATAT CGACAAAACT AAAGCCATTG AAATCGCTAA TCGTTTAATT GAAACCATTG CTGATTACGA TTGGACTCAG ATTGCGCCGA ACTTACATCA AACCGTCAGT GCCGGGGTTG CCAGCTATAG TAATGAAGAA GACTTGTCAC CATTGTTACT AAAAGCCGAC AAAGCGCTCT ATTCTGCCAA AGCTGCAGGT CGAAATTGTG TCAAAGCTGA GTAA
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Protein sequence | MKTSLQIHFF IAIFIAIFFL PTSAFAAYYD NVKADAIYKK IDLADYVDQV SGEELLNEYK RLIASDDEIR QKLYVRLYCW NQPSTTDSEL ASAIKYAEQQ LLIYSVPYPS AIHTDLLLCL GYYKQFSGQL DEALDDLSNA INNAYELEDP RLIADGRSIR GAMLSYQGNY SSALEDLITS QQLYENLNLT YWANDNLSEL AASYRRFGDA ETALKYQIKL EQAYLKANQQ IEADNINNQI AFSLLELGRI DESTARFKQS LTFWKTQKDN IAIADAKTNI AGNLIKLDKI DEALVLLKEA EKEIPVSNDG PHSSLMLYLA QVYLAKNELD KALEYSQLAS IDFNRGGNQR GENENIYLKS DIYQAKGDIE NALKTLQKFI KMHMALDKQN MSDRNSEMQA RFNTNKIQTE NEWLIQRDKD KEQQLQILQR NESMQIIIII LVAIILIIVS MFAYKQVIRK QLFRRLALTD ELTKLANRRD TYSQGHYFLK SSKLSGKPFS IISFDADHFK MVNDTLGHDM GDKVLVKLAS ISASMMRDTD VVGRVGGEEF LILLPNIDKT KAIEIANRLI ETIADYDWTQ IAPNLHQTVS AGVASYSNEE DLSPLLLKAD KALYSAKAAG RNCVKAE
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