Gene Sfri_0805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0805 
Symbol 
ID4277901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp948984 
End bp949661 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content42% 
IMG OID638133573 
ProductThiJ/PfpI domain-containing protein 
Protein accessionYP_749498 
Protein GI114561985 
COG category[R] General function prediction only 
COG ID[COG0693] Putative intracellular protease/amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAT TAATGGTATT AACGTCACAC GATAAATTAG GCGACACAGG CGAGAAAACC 
GGTTTTTGGT TGGAAGAATT AGCGGCGCCA TACTACACAT TTACTGATAA AGGTGTTGAG 
GTTGTTTTGG CTTCACCTAA AGGTGGTTTA CCACCATTAG ATCCGAAAAG TGATGAAGCT 
GATTTTCAAA CTGACTCAAC ACGCCGTTTT GCCACCGATG CTACAGCGCA GGCGTTAATA 
TCCAATACTC ATACTTTGGC ATCAGTTAAT GTAGCAGATT ATGATGCGGT ATTTTATCCA 
GGCGGTCATG GTCCATTATG GGATTTAACT AATGATAAAG ACTCTATTGC GTTAATTGAG 
CAGTGCTACA AAACAGATAA ACTTTTAGGT TTAGTATGTC ATGCACCAGC TGCACTTAAG 
TACCCTAAAA AGCCAGACGG AACCCCACTT GTTGCCGGTA AAAATGTCAC TGGTTTTACT 
AATGGTGAAG AAGAAGCAGT ACAGTTAACT AACGTTGTAC CGTTTTTGGT TGAAGATATG 
CTACAGCAAA ATGGTGCAAC CTACTCTAAG GGTGACGACT GGCATCCGTA TGCGGTAGTT 
GACGGTAAAC TCGTTACCGG TCAAAACCCT GCATCGTCTG AGCTAGTGGC TGAGAAAATG 
TTAGCTTTAT TAAGCTAA
 
Protein sequence
MKVLMVLTSH DKLGDTGEKT GFWLEELAAP YYTFTDKGVE VVLASPKGGL PPLDPKSDEA 
DFQTDSTRRF ATDATAQALI SNTHTLASVN VADYDAVFYP GGHGPLWDLT NDKDSIALIE 
QCYKTDKLLG LVCHAPAALK YPKKPDGTPL VAGKNVTGFT NGEEEAVQLT NVVPFLVEDM 
LQQNGATYSK GDDWHPYAVV DGKLVTGQNP ASSELVAEKM LALLS