| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0792 |
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| Symbol | |
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| ID | 4278709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 929140 |
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| End bp | 933360 |
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| Gene Length | 4221 bp |
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| Protein Length | 1406 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638133560 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_749485 |
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| Protein GI | 114561972 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGATA TCACTATCGA CGGAACAACA CTTTCGCTTC CTAAAGCAGA CAGCTTATTA
AAGGCAGCAA AAAACGCCGG TATTAACATC CCTAGCTTAT GTGATTATTC TCATCGCCAA
GAGAGACAAC ACTGCAATTT GTGCCAAGTA CAAATCAAAA ACCATGATGG TAGTTTACGA
TGTGTTCGCG CCTGTGAAAC ACCGCTAGAA ACTGGTTTAG AGGTCATTAC TCAGTCGAGC
CACTTAAGCC ATCTTCGTCA ACAAGCACTC AAAGATATTC TGAGTGATCA CTTTGCGGAT
TGTGAAGCAC CTTGCCAAAC TGCCTGTCCT GCCGGCGTTG ACGTGCAATC GTATCTGTAT
CATATCGGCA GAGGCGATCA TAAAGAAGCC GTCAAAGTCA TCAAGCAAAC CTTACCTTTA
CCCTTGTCTA TTGGCCGTGT TTGCCCCGCT TTTTGTGAAG CCCAGTGTCG CCGCGGACTG
GTAGATGAAC CTGTGGCGAT TCGTCAATTA AAACGTCATG CAGCAGACTT AGATTTACAA
GATGCAGAGT CTTATGTTCC TCCAAAAGCA CCAGCCACAA ACAAGCGCAT TGCCATTATC
GGCAGTGGCC CTGCAGGATT AACCGCGGGT TATTATTTGT CTAATAATGG CCACGATGTG
ACCATTATGG AGTCGGCTCC TAAAGCTGGA GGCTGGTTAC GTTACGGTAT TCCTGAGTAC
CGCTTACCTA AAGATATACT CGATAAAGAG ATCGAACTGC TCACCCGCAA CGGACTTAAA
ATTGAAACGG GAGTTGAACT GGGTCGTGAT ACCAATTTAA CCGAATTAGT GGCCAATTAT
GATGCGGTTT GCCTCGCGAT TGGTGCGCAA AAAGCCGTGC CAATGAATTA CCCTGGCAGT
GATTTAATCG GTTGTTATTT AGGTGTGGAC TATTTACGCG ATTATTGCAC CGACAAAAAA
TTCATTACAG GCAAAAAAGT GGCCGTCATT GGTGGCGGTA ACACTGCGAT TGATTGCGCT
CGAACCGCTG TGCGAGATGG TGCAGATGTG ACCTTAATCT ATCGCCGTAG CCGTGATGAA
ATGCCAGCGG AGCCCTATGA AATACATGAA GCAGAAGAGG AAGGGGTTAA ATTTCATTTT
CTCACTAATC CCCTGGAAAA CCACAGCGAT GACCAAGGCC GGGTTAAATC CGTCACCTTT
GCTAAAATGG CGCTCGGCGA GCCCGATGAA TCTGGTCGCC GCTCTCCCAA AGCGACTGGA
GAAACCTTTG AAGAAGCATT CGACACCGTA ATACCTGCGG TATCTCAACA AGTGGATTTA
GCCTTTTTAG ACCAGCCAGA AAATCAAATA GACACTGGTC ATATTGCCCT CACCCGCTGG
CATACCTTCC TTGGCTGCGA GCAAACCATG TCTGCAGGGG TAGAAAAACT ATTTGTTATC
GGTGACTCCC GCACTGGCCC TGGTACTGCT GTTGGTGCGG TAGCAGATGG CCGAAAAGCC
GCTGAAGCCA TTGAAGGATT GTTAACTGAA GGCTTAACTT GTCATTTAGA ACCTGGACTA
TTTAACTCAC GAAAGGCCAA CAAAACAGCC TCGTTATCTG CTGAGATATA CCCAGAGACA
GCCAAGCGTC GCCGCTTAAA AATGCCAGAG CTAAACCAGC TCAATCGAGC GCTTAACTTT
GCCGAGGTAG AACTAGGATT CATTCCCGAT GAGGCAATGA AAGAAGCGAT GCGCTGTTTG
GAGTGCGCTT GCCAAGCCAA TACCGATTGT AAATTACGCG ATTATGCCAC CGAATATAAA
GTCGACGGAA AAACACTGGA TCAAACTCAG GCGCGTAAAT TTAAAGTCGA TAACAGTGCG
CCTTTTATTA CTTTCGATGC TAATCGCTGT ATCAGTTGCG CCGCTTGTAT TGATGCTTGC
CATCAACAAA GTGGTCATAA CGTTATCAGC TTTGAAGCCA ATAGTTATCA AGCACTACCC
GATGCTGCAA CAACAGGCAT TAGCCGCAAC GCCCCTCGTG TTGGCTTTAC TGCGTCGATG
AATGACAGCG ATTGTGTGCA ATGCGGTAAC TGTGTTCAAG TTTGCCCTAC TGGCGCTTTG
GTTGATGCCC GCGATAAAAC CCAAGGTAGC GACAGAGCGT TAACCAAAAC CTCAACCGTG
TGCACATATT GTGGCGTTGG TTGCCGGGTT GAACTGCATG TCGATCAGGA CAAAAATCAT
GTAATGCGAG TATCTGGCGA TACTCAATCA GTGGTCAATG AAGGCATGTT ATGTGTTAAA
GGGCGCTCTG GTTTTGATTT TTTAAACAGT CCTAAACGCC TTACAACGCC ATTAATTCGC
AAAAATGGTC AGCTGCAACC CGCCTCTTGG TCTGAAGCCA TTAGTTATAT AGCACAGCAA
CTGCAACCGA TTAAAGATGC CGCTGGGCCA AGCAAGTTTG CTGCATTGTC TTCAGCTAAA
TGCACCAATG AAGAAAACTA TTTAATGCAA AAATTCACCC GTAGCATTAT GGGCACCAAC
AACATTGATC ACTGCGCACG ATTATGTCAT TCATCGTCTG TCGCAGGGCT ATCCGATACC
ATTGGCGGCG GCGCAATGAC CAATGATATT CCCAGCATTA AAGACTCAGA TGTGATTTTA
ATTATAGGAT CCGATACCAC CAGCGCCCAC CCTATTATCG CCTCGCATAT TAAACGAGCC
GTTAGCCAAC ACGGCGCGCG CTTAATTGTC GCGGACCCAA AGAGAACGGC TATTGCAGAC
AGTGCCCATT TATATGTATC ACATAAACCT GGCACAGATG TGATGCTACT GAATGCCATC
ATGCAGCAAA TTATCATCAA TAACTGGCAA GACATGCACT ACATCAATAG CCGTATTGAA
GACTATGAAT TGCTCAAGCA AGAAGTGATG AAGCCTGATT ACAGCTTAGT CAATGCAGCG
TTAATTACTG GTGTAAATGC CGAAGACATT GCCGCTATGG CTAAAATGAT TGGCACAGCA
AACAAAACTG CCTTGTATTA TGCCATGGGA ATTACTCAAC ATACCTCAGG TTACGACAAC
GTTGTATCCA CCTCCAACTT GCAATTGTTG TGTGGCAATA TTGGCGTAAC GGGCGGCGGA
CTAAACCCAC TACGTGGCCA AAGTAATGTT CAAGGTGCTT GTGATATGGG CGCGTTACCC
AATTATTATC CCGGTTATCA GCAAGTCGAT AACCCACTCA ATAACGTTAA ATTTGCCAAA
GCTTGGGGCA ATACATCGCT AAATTCAGAG ATAGGATTAG CAGCAACAGA AATCATGCAG
GCGATTGTGA AAGGTAAACT CGATGCTCTG TATGTTTTGG GAGAAAACCC AGTGCTAAGC
GATCCGGACC AAGCTCATGT CATCGCTGCA CTATCCAAAA TTAAATTTAT GCTGGTGCAA
GATATCTTTT TAACCGAAAC CGCGCAGATG GCTCATGTGG TATTACCCGC AACCGCCTTT
GCCGAAAAAG ATGGCCATTT CACCAATACA GAACGTCGGG TACAACAATT ACGTGTCGCG
TTAACCCCTC CGGGGGATGC GATTGTAGAC TGGAAAATTA TCCAAATGAT TGCCAACAGC
CTTGATGCTA ATTGGCATTA CCACAGCACC AAAGATATTT GGCAAGAAAT TAACCACGTC
ACCCCGCAAT ATCAAGGCCT TACCTGGCAA CGACTTGAAC ACAAGGTAGA TGGTATACAG
TGGCCATGCT TTGATGAAAA CCATCCTGGC ACACCGATTT TGCATACCGA AACATTTTTA
CGCGGTAAAG GCAGAATGAT GCCAGTGAGT TATCGACTAC CTGCCGAAAT GCCCGATAGC
GAATATCCAT TAACCCTTTC AACAGGCCGT TTACTGGAAC AATTCCATAC TGGCACTATG
ACGCGCAAAA CCCCGGAACT GGATATTAAA GGCTCGCCCA GAGTAATGAT TTCGGTTTTT
GATGCCGAAC AATTGGGAGT CAATAACGGT GATATGTTGA AACTGAGTAC TCGCCGCGGA
GAAATAGATA TAGCCGCCTT TGTGACTAAG CGGGCTCAGG TAGGAGTATT ATTTTTACCA
TTCCACTTTG CCGAAGCCGC AGCCAATAAA CTGACCATTA ATGCATTGGA TCCCATTGCA
AAAATTCCAG AATATAAGGT GTGTGCTGTT AAAGCAGAAA AGTCACTGCA GCCAAGGGGC
GCTACGCTGC TAGGTCGCTA G
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| Protein sequence | MIDITIDGTT LSLPKADSLL KAAKNAGINI PSLCDYSHRQ ERQHCNLCQV QIKNHDGSLR
CVRACETPLE TGLEVITQSS HLSHLRQQAL KDILSDHFAD CEAPCQTACP AGVDVQSYLY
HIGRGDHKEA VKVIKQTLPL PLSIGRVCPA FCEAQCRRGL VDEPVAIRQL KRHAADLDLQ
DAESYVPPKA PATNKRIAII GSGPAGLTAG YYLSNNGHDV TIMESAPKAG GWLRYGIPEY
RLPKDILDKE IELLTRNGLK IETGVELGRD TNLTELVANY DAVCLAIGAQ KAVPMNYPGS
DLIGCYLGVD YLRDYCTDKK FITGKKVAVI GGGNTAIDCA RTAVRDGADV TLIYRRSRDE
MPAEPYEIHE AEEEGVKFHF LTNPLENHSD DQGRVKSVTF AKMALGEPDE SGRRSPKATG
ETFEEAFDTV IPAVSQQVDL AFLDQPENQI DTGHIALTRW HTFLGCEQTM SAGVEKLFVI
GDSRTGPGTA VGAVADGRKA AEAIEGLLTE GLTCHLEPGL FNSRKANKTA SLSAEIYPET
AKRRRLKMPE LNQLNRALNF AEVELGFIPD EAMKEAMRCL ECACQANTDC KLRDYATEYK
VDGKTLDQTQ ARKFKVDNSA PFITFDANRC ISCAACIDAC HQQSGHNVIS FEANSYQALP
DAATTGISRN APRVGFTASM NDSDCVQCGN CVQVCPTGAL VDARDKTQGS DRALTKTSTV
CTYCGVGCRV ELHVDQDKNH VMRVSGDTQS VVNEGMLCVK GRSGFDFLNS PKRLTTPLIR
KNGQLQPASW SEAISYIAQQ LQPIKDAAGP SKFAALSSAK CTNEENYLMQ KFTRSIMGTN
NIDHCARLCH SSSVAGLSDT IGGGAMTNDI PSIKDSDVIL IIGSDTTSAH PIIASHIKRA
VSQHGARLIV ADPKRTAIAD SAHLYVSHKP GTDVMLLNAI MQQIIINNWQ DMHYINSRIE
DYELLKQEVM KPDYSLVNAA LITGVNAEDI AAMAKMIGTA NKTALYYAMG ITQHTSGYDN
VVSTSNLQLL CGNIGVTGGG LNPLRGQSNV QGACDMGALP NYYPGYQQVD NPLNNVKFAK
AWGNTSLNSE IGLAATEIMQ AIVKGKLDAL YVLGENPVLS DPDQAHVIAA LSKIKFMLVQ
DIFLTETAQM AHVVLPATAF AEKDGHFTNT ERRVQQLRVA LTPPGDAIVD WKIIQMIANS
LDANWHYHST KDIWQEINHV TPQYQGLTWQ RLEHKVDGIQ WPCFDENHPG TPILHTETFL
RGKGRMMPVS YRLPAEMPDS EYPLTLSTGR LLEQFHTGTM TRKTPELDIK GSPRVMISVF
DAEQLGVNNG DMLKLSTRRG EIDIAAFVTK RAQVGVLFLP FHFAEAAANK LTINALDPIA
KIPEYKVCAV KAEKSLQPRG ATLLGR
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