| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0720 |
|---|
| Symbol | ipk |
|---|
| ID | 4278362 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 846723 |
|---|
| End bp | 847595 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133491 |
|---|
| Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
|---|
| Protein accession | YP_749416 |
|---|
| Protein GI | 114561903 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.137096 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCGA CGAACTCTCG CAAATCAGCG ATATCCAAAA GTTGGCCAGC TCCTGCAAAA
CTGAATTTAT TTTTGCATGT AACTGGCCAG CGAGCCGATG GCTATCATGA ACTACAAACG
CTATTTCAAT TTATTGACCA TTGTGATTAC CTTGATTTTC ATATCACAGA CACACCAGAT
TTAATTCTCC ATTCTACGAT GTCCGATTCT GTCGCTGACA GCGATAACTT AATTCTTAAG
GCCGCAAAAT CACTCAAGCG TTACACCCAA TATGAAGGCG GCGCGCATAT TTGGTTAGAA
AAATTGTTGC CTATGGGGGG TGGTTTAGGT GGCGGATCAT CTGATGCAGC TACCACATTA
GTGGCGCTAA ATGCCTTATG GAAAACCAAT ATATCACCCA ATAAACTAGC TGAAATTGGC
TTAACGCTTG GTGCGGATGT CCCTGTTTTT ATTAATGGTT TATCTGCGTT CGCCGAAGGT
GTCGGTGAGA AGTTGATCAC AGTACAACCA CCCGAGTCAT GGTATTTAGT TATTGTCCCT
GATGTACATG TATCAACCCA GGCCGTTTTT CAACATCCTG ATTTGCCACG TAACACACCA
AAATTGGATA TGAGCAGTTT AATGACTCAA CAATGGAGCA ATGATTGTCA GAAACTGGTC
ACAACTAAGC ACCCTCAAGT TGCCAATGCC TTAAGCTGGC TGGTAGAATA TGCGCCGTCG
AGAATGACCG GAACAGGTGC ATGCGTGTTC GGGGAATTTA CACATTCGCA ACAAGCCCTT
GACGCTTTAG CCAAATTACC GGCTGATATG CAAGGTTTTG TCGCAAAGGG GATGAACAAG
TCGCCATTAC AAATACGGCT TGAGCAGCTC TAA
|
|---|
| Protein sequence | MTSTNSRKSA ISKSWPAPAK LNLFLHVTGQ RADGYHELQT LFQFIDHCDY LDFHITDTPD
LILHSTMSDS VADSDNLILK AAKSLKRYTQ YEGGAHIWLE KLLPMGGGLG GGSSDAATTL
VALNALWKTN ISPNKLAEIG LTLGADVPVF INGLSAFAEG VGEKLITVQP PESWYLVIVP
DVHVSTQAVF QHPDLPRNTP KLDMSSLMTQ QWSNDCQKLV TTKHPQVANA LSWLVEYAPS
RMTGTGACVF GEFTHSQQAL DALAKLPADM QGFVAKGMNK SPLQIRLEQL
|
|---|
| |