| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0620 |
|---|
| Symbol | |
|---|
| ID | 4278420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 723008 |
|---|
| End bp | 723637 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638133377 |
|---|
| Product | two component transcriptional regulator, LuxR family protein |
|---|
| Protein accession | YP_749318 |
|---|
| Protein GI | 114561805 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000000000275655 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAAGC CGTATTCCGT ACTTGTTGTC GATGATCATC CATTATTACG TCGTGGTATT
TGCCAATTAA TCACCTCCGA CGGTGACTTT TCGCTTTTTG GTGAAACGGG CACGGGACTA
GAAGCTCTTA CCGCGGTAGC CGAAGATGAA CCCGATATTA TTCTGCTCGA TTTGAATATG
AAAGGCATGT CTGGGCTTGA TACTCTTAAC GCTATGCGTC AAGAGGGAGT AACAGCAAGA
ATTGTGATTT TAACCGTTTC AGACGCTAAA CAAGATGTCG TTAGACTACT GCGGGCTGGT
GCTGACGGCT ATTTACTCAA AGACACTGAG CCTGATCTAT TGTTAGAACA ACTCAAAAAA
GCCATGCTGG GTCACCGAGT GATTAGTGAT GAGGTAGAAG CTTATCTTTA TGAGTTGAAA
AACACGATTG ACGACAACAG CTGGATAGAG AATTTAACCC CGCGTGAATT GCAAATATTG
CAAGAGCTAG CTGAAGGCAA AAGTAATCGA ATGATCGCCG AAGATTTACA CATCAGCGAA
GGCACTGTTA AAGTTCATGT GAAGAATTTA CTGCGTAAAG CAAATGCTAA ATCTCGCACT
GAAATGGCGG TACGCTACCT TAACAATTAG
|
|---|
| Protein sequence | MGKPYSVLVV DDHPLLRRGI CQLITSDGDF SLFGETGTGL EALTAVAEDE PDIILLDLNM
KGMSGLDTLN AMRQEGVTAR IVILTVSDAK QDVVRLLRAG ADGYLLKDTE PDLLLEQLKK
AMLGHRVISD EVEAYLYELK NTIDDNSWIE NLTPRELQIL QELAEGKSNR MIAEDLHISE
GTVKVHVKNL LRKANAKSRT EMAVRYLNN
|
|---|
| |