| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0614 |
|---|
| Symbol | |
|---|
| ID | 4278536 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 717393 |
|---|
| End bp | 718079 |
|---|
| Gene Length | 687 bp |
|---|
| Protein Length | 228 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133371 |
|---|
| Product | twin-arginine translocation pathway signal |
|---|
| Protein accession | YP_749312 |
|---|
| Protein GI | 114561799 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0437] Fe-S-cluster-containing hydrogenase components 1 |
|---|
| TIGRFAM ID | [TIGR03149] cytochrome c nitrite reductase, Fe-S protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.898368 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACT CAAGAAGACA TTTCCTTAAA AGCACCTGTG CATTGGTTGC CGGCGTGTCG
GTATATCCAC TCAGTCGCGA TCAAGCCAAT GCCGATACGG GCATAAGAAT AAACAATTTA
AAATACGCCA TGCTACATGA CGAAACCAAA TGTATTGGTT GTAACGCTTG TGTTGAAGCG
TGTCGAGAAG TGAATCATGT TCCCGAAGGT GTCACCAGGC TGAGCATTGA ACAGTCGGGC
CCTTATGGCA AGTATCCAAA TCAGTATTAC CACTTTAGCC GCCACTCCTG CCAACATTGT
GAAGATGCGC CTTGCGTTAA TGTATGCCCG ACTGGAGCCG CCTTTATCGA TAAAGAAAGC
GGCATTGTCT CGGTTAATGC AGATAAATGT GTTGGTTGCC AATACTGTAT TTTAGCCTGC
CCTTACGATG TACGTTTTAT TAATCCTGTG ACTAAGGCAG CCGACAAATG TGACTTTTGC
AGGGAAACTA ATCTCAAACA AGATAAACAA CCTGCCTGTG TAGAAGCTTG TCCAACCAAA
GCATTGGTGT TTGGTAATCT TAAAGATCCT GAGTCTGAAC TGGTTATGCT GTTAAAAGCT
AATCCAACAC AACGGACCAA GTTAGATTTA GGTACCCGGC CCAAACTGTT TCGTATTACA
GCCAAACAAG GGGAGATTAT ATTATGA
|
|---|
| Protein sequence | MENSRRHFLK STCALVAGVS VYPLSRDQAN ADTGIRINNL KYAMLHDETK CIGCNACVEA
CREVNHVPEG VTRLSIEQSG PYGKYPNQYY HFSRHSCQHC EDAPCVNVCP TGAAFIDKES
GIVSVNADKC VGCQYCILAC PYDVRFINPV TKAADKCDFC RETNLKQDKQ PACVEACPTK
ALVFGNLKDP ESELVMLLKA NPTQRTKLDL GTRPKLFRIT AKQGEIIL
|
|---|
| |