| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0611 |
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| Symbol | |
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| ID | 4278533 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 713278 |
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| End bp | 715599 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133368 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_749309 |
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| Protein GI | 114561796 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01168] Gram-positive signal peptide, YSIRK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000075991 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTCGA GTAATTACAG TAAGTTATCA TTAGGTGCTC AAGCTGTTGC TGCAGCATTA
GTATTCAGTA GCCCAGCGCT ATATGCCGCA GACACCAAAA ATGAAACTTG TGATAAGGAT
ATATTGGCAA AATGTAAACC AGCGCAAACA GACGAATCTA TTGAGCGAAT TCGTGTTCAT
GGTGTGCAAA ACTCGGTTTA CATGTTTAAT AACTCAGCCG ACAAACGCCG TATGGCTGCA
CTTGTCGATA CGCCGCAAGT GATTACCGTG TTAACTCAAG ACCAAATTCA AGAGTCAGGA
AATACGGACT TAAAAGACAT TTTGTCAGCT CAAGCGGGTG TTACTCTTGG TACTGGTGAA
AACGGTAATG CATTCGGTGA TCGTTATATT ATCCGTGGCC ACGAAGCACG TAGTGACGTG
TTTGTTGATG GACTTCGCGA CCCTGGCATG ACCACTCGCG AAAGTTTTGC TACCGAGCGA
GTTGAAATTA CCAAAGGTCC AAGTTCAACA TTTGCTGGCC GTGGTTCATC AGGTGGTGCC
ATTAATAGTG TGACTAAAAA AGCCTCAGTA GCTTACGATT TTGGTCGCGT CGATTTGGGT
ATTGGTACTG ACGATCACAC TCGTCTAACG GTGGACTATA ACTTACCGAT ATCAGACAAA
GTGGCAGTAC GCCTTAACGG ATTAACGGCT GAAGAAGACA AACCGGGCCG CGAAGGTATT
ACGAGTGAAC GCCAAGGTGT TCAGTTATCG GGTGTGTATG AAGCCACCGA TGCATTGTCG
TTTACTGCCG ATGGTTACTA CCTAGACGCG AAAGATGTGC CAGATTTAGG CAGTTATTTT
GATCGAGATA CTCGTAAGCC GCTAGAAGAT ATTCCTGTTT ATGCTCAAGA TGGTGATTTT
CTAAATTCTA AGGTCACCAC GTTCACTTTA CGTACCGAAT ATGAGTTAAA TGACAGCATT
ACGTTGTACA ACGCCACACG CGTTGGACAT ACCGAAAATG GCTATATTAC AACAGGGATG
GGCGGCACAA CGCGCGCAGA TACCGACCCA ACAGCGCCTG GAGCAAGCAC GTTAACGCTT
AGTACTCACC AAGGTAACCA AGATGTTGAT TATGTCAGCA CTCAATTCAA TTTATTTTGG
AACACCCAAG CACTTGGTTT TGATCACAAG TTAGTGTTTG GCCTTGAATA CACAGATGAA
AATGTTGATA ACGGCGTATA TAGCATCACC AACAATAATG ATGGTAATTG TTTGACCGAG
GGTCGCCGTG GTGTATCAGA GGCTTATTGT ATTATTGATG GTAACGGCAA TACTGTCGAC
AATATCGGCC AGTTAATGAA TCGCAGCTAT GTTGATGGTG GATCTGATGC TATATACGAC
ATCGAAACCG TGTCGGCATA CATGATGGAT ACGGTTGAAT TGACCGATCA GTTAGCACTA
TTCTTTGGTT TTAGACAAGA CAGCTTTGAT TACAGTAACA ACACAACAGG TCGCGATGGT
GAAGTGGATT ATGCCTATTC CGATACCATG TATAACGGTA ATATTGGCTT AGTTTATGAC
TTGTCTGAAG ATGCCAATAT CTACGCCAAC TACAGTACTG CAACCAACAT CAACGGCGGA
GAGTCTGATT TAGGTGCTAA CTGTGGTTAC GGTGGTATTT GTGGTACGCA AGAGCAAGCT
GCTGAAGCTG ATGCCGAAAT TGTTGAAAAC CTAGAGCTCG GTACCAAGTG GATGTTGTTT
GATGACAAAA TGATGTTTTC GGCATCGATT TTCCAAATCA CTAAAAGTGA TGTAATGGAA
AGTGTTGGCG ACAGTTACTC AACGCTAGGT ACACTTAACA CGGGTAAAAA CCGCGTTAAA
GGCATTGAGT TTGGCATGGT CGGCAATATT ACTGACAAGC TCAGCATACA ATTCTCGGCT
GCCAAAATGG ATTCAGAAAT TTTAGAGTCT TACAATCCAG CTAACATTGG TTTAGTACTA
AGTAACTTTG CTGACGAAAG TGCTTATTTG CAACTGCGTT ATGAGCTAAC CGAATCATTT
GTATTTGGTG GTAGCTACAC TTATCAAAGT GAAATGTATG GCGGACAACC AGACACTGCA
GCAGGTTATG ATAGCGACAA TAGCCGTTAC AGCATTGTGG TGCCTAACTA TCAAGTAGTT
GATTTATTTG CCAGTTACAA TGCCACTGAG GATTTAACTT TCCGCATAAA CGTAGGTAAC
ATATTGAACG AAGAATATTG GACTGCAGCT TATCGTTCTG GCTCATTTAT GTACTTAGGT
GACGCCCGTA ATGCTAAATT GTCGATGACA TATGAGTTTT AA
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| Protein sequence | MKSSNYSKLS LGAQAVAAAL VFSSPALYAA DTKNETCDKD ILAKCKPAQT DESIERIRVH
GVQNSVYMFN NSADKRRMAA LVDTPQVITV LTQDQIQESG NTDLKDILSA QAGVTLGTGE
NGNAFGDRYI IRGHEARSDV FVDGLRDPGM TTRESFATER VEITKGPSST FAGRGSSGGA
INSVTKKASV AYDFGRVDLG IGTDDHTRLT VDYNLPISDK VAVRLNGLTA EEDKPGREGI
TSERQGVQLS GVYEATDALS FTADGYYLDA KDVPDLGSYF DRDTRKPLED IPVYAQDGDF
LNSKVTTFTL RTEYELNDSI TLYNATRVGH TENGYITTGM GGTTRADTDP TAPGASTLTL
STHQGNQDVD YVSTQFNLFW NTQALGFDHK LVFGLEYTDE NVDNGVYSIT NNNDGNCLTE
GRRGVSEAYC IIDGNGNTVD NIGQLMNRSY VDGGSDAIYD IETVSAYMMD TVELTDQLAL
FFGFRQDSFD YSNNTTGRDG EVDYAYSDTM YNGNIGLVYD LSEDANIYAN YSTATNINGG
ESDLGANCGY GGICGTQEQA AEADAEIVEN LELGTKWMLF DDKMMFSASI FQITKSDVME
SVGDSYSTLG TLNTGKNRVK GIEFGMVGNI TDKLSIQFSA AKMDSEILES YNPANIGLVL
SNFADESAYL QLRYELTESF VFGGSYTYQS EMYGGQPDTA AGYDSDNSRY SIVVPNYQVV
DLFASYNATE DLTFRINVGN ILNEEYWTAA YRSGSFMYLG DARNAKLSMT YEF
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