| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0555 |
|---|
| Symbol | |
|---|
| ID | 4278723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 642616 |
|---|
| End bp | 645213 |
|---|
| Gene Length | 2598 bp |
|---|
| Protein Length | 865 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133313 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_749254 |
|---|
| Protein GI | 114561741 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGACTC ACTCTTCATC ATACTTATCC TCAATTAAGC GTTTAAGATT ATGCTTGCAG
CTGTTTGCCA GCCATTATCG TCACGCCCCA TTGCAAGCTA GCGCAATTTT ATTGGGCATC
ATGCTGGCGG TAACGTTATT GATTGGCGTA TACGCCACTA ACGAAAACGC TAAACAAAGC
TATGGCAATG TATCCGAACT CATGAGCCAA CAAGCTCGAC TATCGATTAG TCACCGCACT
GAGGACAGCA TTGATGAGTC GGTTTATTTT GCGTTAGCCA ATGCAGGATT CAACACCATC
GCCAGCATTG AAGGAATTGC AACCGATGAA CAAGGCAGGC TATGGCGAGT TAATAGTAGT
GATGTAGTCG CCGCGATTAC CAGCAGTATG CAACTACAGC AATCGGGTAC TAGCTCATCG
ATAACAGCGA CGCATATTCC GTTAGCAGAA CTACTGGCAG GCAAACCTAA AGTGCTAATG
TCGACAAGCC AGCGCGAACG CATGAGTAAA GTGACTAACA ACACTGACCG CATAATACTT
AATGGTATGC CTGTTGAATT TGTTGCCATT GACGATTCAT GGGGACTTGG TTCTGCTATT
TTGGCCGATA TCTCACTCGC TCAACCTATG CTGAATATGC AGGGTAAATT AAGTTACATT
GCCGTATTTG ATTCCCCCTC CGCAGATACA AATATCTCAG ACGCAAACGA ATCAGAAACA
GATGCGCAAC TAATCGCTCG ATTAACGCAT ACCTTAACCC AAGCAGGGAT TGTTCCCACC
AAGCTGAACT TCACCACCCA AACAAGTGAA GGCGAATCAC TTACCGCCCT CACTGCCAGC
TTTCATCTTA ATCTTGATGC CATGAGTATG TTGGCTTTTG TGGTCGGCTT ATTTATCGCT
TATAACGGGG TTCGTTATAG CTTAATGAAG CGTCAAAAAT TGCTAGTGCA AATCATGCAG
CAAGGGCTCG ATAGACGCAC CATCATGCTA GCCCTAAGCA TTGAAATAAT CTGCTTAGTG
TTTATCGGTT GTGTATTAGG TTTTATTGTC GGACTGCAAT TATCGCAATG GTTACAACCT
ATGGTCGCGA TGACTCTTGA GCAGCTATAT GGTGCTAAAT TGTTACCGGG AAACTGGCAG
TGGCAATGGT TTGCACAAGC GCTCGTATTA ACCCTGTCTG CAGCCTTTGC TGCTTGTATT
CCAATGCTAA TAAACCTTAT TAACACCCCA CTTGCACAAG GGGCTCAAAA GCAGCCACAA
AGCCGACAGT TAAGTATTAT TCATTGGCGA CAATTCATTA TTGCGGCATT GCTACTTTTG
GTTTGCACTA TCGCGTTTGC GTTTACTGAA CAATATCGCC ATAGCTTAAT ATTACTAGGC
GTACTCTCGG TCGCGATTCC ATTACTGTTA CCACAATGTC TGCATTGGGC GGTTAACTTA
CTCAGTCCTT TTATGCCTAA AGGGTTGTGG CATTATGTGA TTGCCGAAAC CAAAGAGATT
ATTGCCCCAC TCGCTCTGGC GATGATGGCT ATGCTGCTAG CTTTGTGTGC CAACATTGCC
ATGAATACCT TAGTGGGTAG TTTTGAAATC ACCTTAAAAA AGTGGCTCGA TGCCCGTTTG
CATGCAGACT TATACATTAG ACCCAACCCA AACCAAATCG ATACATTAAC GCTATTATTA
AAACAAGACC CCAAGGTTGA GGCTATTTAT GAGCAATGGA CTGTCGATAG CCATCTTAAT
CGAGCTGAAA CACCGCAAAC ACAAGTGCCA ATTCATTTAG TCAGTCGTGA CCATTTGTCG
TTAACTGAAA CAACCGTGTT TAAAACCACT GCCGATGATT TTTGGACAAC CTTCACAGCA
GGTGAAAGCC TGATGATCAG TGAGCCATTA TCGATAAAAT ACCAACTCGA TATAGGCGAT
AAAGTTCAAC TATCGCAACT TGATCAACAC ATCATGACGA TTGGCGGTAT TTATTACGAT
TATGGTAATC CCCAAGGCGA AGCGATTATC ACTCAGTCTT TATGGCAGCA ATCTCAATTA
CCAGCAAAAC CCATTAGCCT GGCAGTGTCT TATCAAGGCG ATATTACCCC GCTACAAAAC
AGTATTAGCC AACAGCTCAA CTTGTCTTCA GCCTATATGT ACAGTCAACA GCGGATTAAA
ACAGAAGCGA TTAATATGTT TAACAAAACA TTTTCGATCA CTGTGGTACT CAACAGTTTG
ACCTTACTGG TGGCGGCAAT CGGCTTATTC AGTGCCTGTA TAATGCTAAC GCAAGCGAGG
CAAGCGCCAT TAGCCCGCTT GTATGCTCTA GGTGTTAGCC GTAATCAATT ACGGATGATG
GTGTTAGTAC AAATGCTATT TATCGTATTT TTGACCTGCT TTCTCGCGTT ACCGACAGGC
GCGTTACTGG GTTATTTATT AATTCATAAA GTCACATTAC AAGCATTTGG CTGGAGCATC
GCCATGGTCT GGGATTGGGC TGCATATGCT CAAGTGGTGA TCATTGCTGT AGTCAGTTGT
TTACTGGCAG TGTGTTTACC TTTGTATTGG CAAACCAGAA AACCCTTGAT ATCAAGTTTG
CAACAGGAAG CGCTATGA
|
|---|
| Protein sequence | MMTHSSSYLS SIKRLRLCLQ LFASHYRHAP LQASAILLGI MLAVTLLIGV YATNENAKQS
YGNVSELMSQ QARLSISHRT EDSIDESVYF ALANAGFNTI ASIEGIATDE QGRLWRVNSS
DVVAAITSSM QLQQSGTSSS ITATHIPLAE LLAGKPKVLM STSQRERMSK VTNNTDRIIL
NGMPVEFVAI DDSWGLGSAI LADISLAQPM LNMQGKLSYI AVFDSPSADT NISDANESET
DAQLIARLTH TLTQAGIVPT KLNFTTQTSE GESLTALTAS FHLNLDAMSM LAFVVGLFIA
YNGVRYSLMK RQKLLVQIMQ QGLDRRTIML ALSIEIICLV FIGCVLGFIV GLQLSQWLQP
MVAMTLEQLY GAKLLPGNWQ WQWFAQALVL TLSAAFAACI PMLINLINTP LAQGAQKQPQ
SRQLSIIHWR QFIIAALLLL VCTIAFAFTE QYRHSLILLG VLSVAIPLLL PQCLHWAVNL
LSPFMPKGLW HYVIAETKEI IAPLALAMMA MLLALCANIA MNTLVGSFEI TLKKWLDARL
HADLYIRPNP NQIDTLTLLL KQDPKVEAIY EQWTVDSHLN RAETPQTQVP IHLVSRDHLS
LTETTVFKTT ADDFWTTFTA GESLMISEPL SIKYQLDIGD KVQLSQLDQH IMTIGGIYYD
YGNPQGEAII TQSLWQQSQL PAKPISLAVS YQGDITPLQN SISQQLNLSS AYMYSQQRIK
TEAINMFNKT FSITVVLNSL TLLVAAIGLF SACIMLTQAR QAPLARLYAL GVSRNQLRMM
VLVQMLFIVF LTCFLALPTG ALLGYLLIHK VTLQAFGWSI AMVWDWAAYA QVVIIAVVSC
LLAVCLPLYW QTRKPLISSL QQEAL
|
|---|
| |