| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0548 |
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| Symbol | |
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| ID | 4278716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 627964 |
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| End bp | 632517 |
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| Gene Length | 4554 bp |
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| Protein Length | 1517 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133306 |
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| Product | carbamoyl-phosphate synthase L chain, ATP-binding |
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| Protein accession | YP_749247 |
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| Protein GI | 114561734 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAGCA AAAAGCAGCC CGCTAACAAG ACTCAAGCAC TATCGGCTGA CCCACTTTTC
TTACAAGCTG AACACTTGGC TAAAGACTTT TCATTATTTC CTGCTCATAA CAAGCAGAGT
TTATCTGAAG AAGTGAAAGG ATTATTAACA GAAGATTCCA TTCAATCAAA CTTGAAAAGT
TTGGCATCTT TAGACGTTGA CGGTTATGTC AATAAAGTTA TCCAACCGAC CTTGGATAAA
AACCGCCCAG GCGCGAAGCG AATGATCGCT GACTTAAAAG GCAAGATTAT TGCCGAAAGT
CATATCGGAC CGTTTTATCG TGCTGAAGTG GAACTTAATT TTGGTACTCG TACTCGCCGT
ATCGGTTTTA TTGCGCAAGA GCGCACGACC GCAAACGGTG CATGGATGCC TGAACACCAT
CTTGCAGCAT GTAAGGCAAT CCGTCATTTC GCTGAATTGT CTATGCCGAT TGTATATTTA
ATCGATACTC CTGGTGCAGA TGCAGGGGAA ATTGCTAATA GCCAAAATCA AGCGCATACC
ATTTCTAAAG CGATTGCTGA AAGTGCTAAT GTTGATGTAC CGACAGTCGG TATTGTGATT
GGTGCAGGCT ATTCTGGTGG TGCAATTCCA TTAGCTGCAG CGAACATTCT ATTATCTGTA
CGAGATGGTA TTTTTAACAC CATTCAACCA CAAGGTTTGC AGAGCATTGC GCGTAAGTAC
AACTTGTCAT GGCAGGAATG TGCTAAATCG GTAGGCGTGT CACCAGAAGA GTTGTATACC
GCTGGGTGTA TTGACGGCAT TATCGATTTT ACTCCATCAG ATAAAGATGA GCGTCAGCAT
AATTTCCGTC GTGCGATTAT CAGTTCTATT GAAGCCGTTG AACGTGCTGC AATGAACTTT
GTACGCGAAT CTACAGATTT AAGAGAGCAT TATGATCGCA GTTTACAGCG TTATTTAGCG
CCGTCGGCTA ATCTGCTCAC GCTTGAAAAT AATACCCGCT TATCTGTCGC CAATAACCCA
ACGATGTACC ACAATATTTT TGGTAGTGCA TATCGTTATT TACGTTATTT GACCTTGCGT
AGCCGCATTC ATTCAATCTC ACAAGAACAG TACGGTCGCT TATCAAAAGT GAGCGTGCCA
GAAGGTGATT TGTTAGCGCG CATTAAGCAA GAACAAGAAC GCGTGTTCCA GGCGTGGTTA
ACCAACCCTG ATAAGCTCGT TTACGATGAA GAACTGAATA AACTTTGGGG TACATTCAGC
GCTAAACGTA AAGACATTTC TGCAGAGCGT AACGTGATTA CACGTTTTAT TTTGGGTGAA
CCAAAAGAGA ACTATAAAAA AGCACGTAAA GCATTGTTAT TTAACATTGG TTGGTCGTTA
TACCATCGCT GGAAAAGTAA CGCCGCTAAC AATTTCAATG GCTTAATTAA GCATTTAGAG
TCACTGCCTA AGTCTACAAC GCAAGCTCCA TGGCCTGAGC TAAGCCAGCT TACCGTGTTG
GATATTGTGG TTAATGACGA ATTACGCGCA GACTTTATTT GGCAGTGTCA TAACGTGCTT
ATTTTCAATG CGCTATATGA CAATGTGGTA GGCAGCTTGG CATCAATTTC GAAAGAAGCC
ATGATGTCAA AAAGTTTGTC TCGTGAATCA GTGGATAAAT TACTCCACAA ATCAATTGAT
AACGCATTAT CGACAAGCGA CAAAGCTAAT GACAAGAGCA AGTTCTATAA GTGGCTTAAA
TACTTTATGG ATCAATCGAA TCGTGCTGAA TTGCTTACTC GTGTAGAGCA ATGGAAGAGT
GTGGGTTTCC CACAGTTAAA CGATTCGTTA TTTGTAATCT TAACTTATTT CTTCGAGCGT
TTATTACCAG AGTACTTTGA TAGCGAAGAT GAACACGATA AATACACCGG TACAATTAAC
CCTGTACGTA TTGGTCGTCG TAAAGATTTT TGGAACCGTT TAACAATGGG TTACCAAGAC
TTACTGATCC AAAAAATACT TCGCGAAGAG AAAAAGCAAG GCAAGATGGG CTGGGAAAAT
ATTATCAAAC AGTTCTTTAC TAAGTTTGAT GAAATTGATG CCGACAAAAT GTCAGCTAAC
ATGCTTAACT TCCCTGGTTT CCGCTTATCG ATTGAAGATG CTATTGATAA AAAGATCCGT
CCTTGTGGTT TAATTACTGG TCTGGCTGAC TTTAATAATA ACGGCAGTAA GTTACGTGTT
GGTGTTGCTG TTTCAAATAC GGCATTCCAA GCAGGTGCAT TTGATATGGC CAGTGCTGAG
AAATTCAGTT CGCTATTAAT TGAATGTGCT AAACGTAAAT TGCCGGTAAT TTGTTTTATC
AGCTCTGGTG GTATGCAAAC CAAAGAAGGT GCTGCGGCAT TGTTTTCAAT GGCGGTCGTG
AACGACCGTA TTACGCGCTT TATTCGTGAT AACGAATTAC CTGTATTGAT GTTTGGTTTT
GGTGACTGTA CTGGTGGTGC TCAAGCCAGT TTTGTAACCC ATCCTTTAGT GCAGACTTAC
TATCTTTCTG GTACCAACAT GCCGTTTGCT GGTCAAATGG TAGTGCCTGC GTACTTACCA
TCTACAGCAA CATTGTCGAA CTACTTATCT AAAGTGCCAG GGGCAATGAC TGGGTTAGTT
CATAATCCAT TTAGCGACAC CTTAGACACT CAGTTGTCGG GTATTGATCC ACTAATGCCA
TTACCGACAA TTAATATAGA AGAAGTGATC AGCAAAGCGT TGTCGACTTT AGTGCCTGAA
GTGATTGAGC TAGAAGACGT TATTGTACAA GACGATCCTC GTGCATTGAT GAAGCCAATT
AATAAAGTGC TGGTGCATGC TCGTGGTTGT ACGGCAGTTA AACTGATTCG TAAAGCACAT
GACAACAACA TTAATGTAGT GTTGGTGGCG TCAGATCCAG ACATGACATC TGTTCCTGCA
GATATGCTGA AAGACACTGA TAAACTTGTG TGTATTGGCG GTAATACTTC AGATGAAAGT
TACCTCAATG CTTACTCAGT ATTGAAAGTC GCTGAGTATG AAAATGTTGA TGCGTTGCAC
CCAGGTATTG GTTTCTTATC AGAAAGCCCA CAGTTTGCGG CATTATGTGT TAACAATGGG
GTCAACTTTG TTGGTCCTAG CGTGCATTCA ATGACGACCA TGGGTAACAA ATCTAATGCT
ATCCATACTT CTCAAAAGCA AAATGTGCCG GTTGTTCCTG GCAGTCACGG TATTTTGACT
AACGCAGAAC AAGCTGTGAA CGTAGCGTCT GAAATTGGTT ACCCTGTGCT GTTAAAAGCG
GTGCAAGGTG GTGGCGGTAA AGGTATTCAG GTCGTTAAAC GCCCTGAGGA CATGATTGGT
TTCTTCCAGA AAACAGCGAC AGAAGCCGCC GCGGCATTTG GTAATGGTGA TTTGTATTTA
GAAAAATACG TTACATCATT GCGTCATATT GAAGTGCAGT TACTGCGTGA TAAGTTTGGC
AATACTAAAG TATTGGGTAT TCGCGACTGT TCAGTACAAC GTAATAACCA GAAAGTGATT
GAAGAGTCTG GTTCAACGAT GTTGCCTGAA GAGCTCAAAC AGCGCGTGAT GGAATACACT
CGTGCATTAG GTGATGCGAC CGATTACATG GGTGCAGGTA CCGTTGAGTT TATTTATAAC
TTAGATGCTA ACGAAGTGTA CTTCATGGAA ATGAACACAC GTCTTCAAGT TGAACATCCG
GTTACTGAAG CGACATCTGG TATTGATATT GTAAGCGCGC AGTTTGATAT TGCTGCGGGT
CGTTCAATTG AAAATCTAGA ACCCGTAGAC CAAGGTTACG CCATGGAAGT GCGTGTGACT
GCGGAAAAAG CGGCGCTTGA TAGCCACGGT ATTCTTCAGC TTATTCCTAA TCCAGGTAAA
ATCACTGAAT GTGTATTGCC TCAGCGTGAC GATGTCGAAA TTATTTCGAT TGCAGCAGCA
GGTAAGGAAG TATCACCATA CTATGACAGC TTGATCGCAC AGATCATTAT ACGTGGTACT
GACCGTGCCG ACGTTGTGTC TAAAATGTAT GCGTATCTCG ATAGCGTAGT GATTAAAGGT
ATTGCGACTA ACATTCCATT GTTGAAGCTT ATCCTTAAAG ACCCAACCTT CAACGAAGGG
GTATATGACA CTAACTACTT GCCACGCTTA ATGGCTGAGT TAGATATACC TGCACTGATT
GCTGAAATGG AAGCGGCAGC AGAAGCACTT GAGGTTGATA CTGAATCATT ACGTGTTGGC
GAAAGCAACG AGTTGAAAGT ATTGGCTCAA GGCGCAGGTA TTTTCTATAC ATCTCCAGCA
CCAGGTGAAG CAGACTTTGT TAAAGAAGGT GACATTGTCA CGGTTGAACA AACATTGGCA
TTGATGGAAG CAATGAAGAT GTTCTCTCAA TTAACGTTAG CGGGCTTTAA TCGTCAAACA
GGTGTGTTAT ATCCTGAAGA CCAAAAGTAT CGTATTGAAC GTATTCTTAA TAGCAATGGA
CAGCAAGTTT CGCAAGGCGA CTTACTGTTT GTGATATTAC CCATCGAAGC GTAA
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| Protein sequence | MTSKKQPANK TQALSADPLF LQAEHLAKDF SLFPAHNKQS LSEEVKGLLT EDSIQSNLKS
LASLDVDGYV NKVIQPTLDK NRPGAKRMIA DLKGKIIAES HIGPFYRAEV ELNFGTRTRR
IGFIAQERTT ANGAWMPEHH LAACKAIRHF AELSMPIVYL IDTPGADAGE IANSQNQAHT
ISKAIAESAN VDVPTVGIVI GAGYSGGAIP LAAANILLSV RDGIFNTIQP QGLQSIARKY
NLSWQECAKS VGVSPEELYT AGCIDGIIDF TPSDKDERQH NFRRAIISSI EAVERAAMNF
VRESTDLREH YDRSLQRYLA PSANLLTLEN NTRLSVANNP TMYHNIFGSA YRYLRYLTLR
SRIHSISQEQ YGRLSKVSVP EGDLLARIKQ EQERVFQAWL TNPDKLVYDE ELNKLWGTFS
AKRKDISAER NVITRFILGE PKENYKKARK ALLFNIGWSL YHRWKSNAAN NFNGLIKHLE
SLPKSTTQAP WPELSQLTVL DIVVNDELRA DFIWQCHNVL IFNALYDNVV GSLASISKEA
MMSKSLSRES VDKLLHKSID NALSTSDKAN DKSKFYKWLK YFMDQSNRAE LLTRVEQWKS
VGFPQLNDSL FVILTYFFER LLPEYFDSED EHDKYTGTIN PVRIGRRKDF WNRLTMGYQD
LLIQKILREE KKQGKMGWEN IIKQFFTKFD EIDADKMSAN MLNFPGFRLS IEDAIDKKIR
PCGLITGLAD FNNNGSKLRV GVAVSNTAFQ AGAFDMASAE KFSSLLIECA KRKLPVICFI
SSGGMQTKEG AAALFSMAVV NDRITRFIRD NELPVLMFGF GDCTGGAQAS FVTHPLVQTY
YLSGTNMPFA GQMVVPAYLP STATLSNYLS KVPGAMTGLV HNPFSDTLDT QLSGIDPLMP
LPTINIEEVI SKALSTLVPE VIELEDVIVQ DDPRALMKPI NKVLVHARGC TAVKLIRKAH
DNNINVVLVA SDPDMTSVPA DMLKDTDKLV CIGGNTSDES YLNAYSVLKV AEYENVDALH
PGIGFLSESP QFAALCVNNG VNFVGPSVHS MTTMGNKSNA IHTSQKQNVP VVPGSHGILT
NAEQAVNVAS EIGYPVLLKA VQGGGGKGIQ VVKRPEDMIG FFQKTATEAA AAFGNGDLYL
EKYVTSLRHI EVQLLRDKFG NTKVLGIRDC SVQRNNQKVI EESGSTMLPE ELKQRVMEYT
RALGDATDYM GAGTVEFIYN LDANEVYFME MNTRLQVEHP VTEATSGIDI VSAQFDIAAG
RSIENLEPVD QGYAMEVRVT AEKAALDSHG ILQLIPNPGK ITECVLPQRD DVEIISIAAA
GKEVSPYYDS LIAQIIIRGT DRADVVSKMY AYLDSVVIKG IATNIPLLKL ILKDPTFNEG
VYDTNYLPRL MAELDIPALI AEMEAAAEAL EVDTESLRVG ESNELKVLAQ GAGIFYTSPA
PGEADFVKEG DIVTVEQTLA LMEAMKMFSQ LTLAGFNRQT GVLYPEDQKY RIERILNSNG
QQVSQGDLLF VILPIEA
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