| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0539 |
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| Symbol | |
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| ID | 4276959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 617703 |
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| End bp | 619370 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133297 |
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| Product | hypothetical protein |
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| Protein accession | YP_749238 |
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| Protein GI | 114561725 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1315] Predicted polymerase, most proteins contain PALM domain, HD hydrolase domain and Zn-ribbon domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTAGAGC CTTCACTCGT CGCACTAAGT GCAGATAAAA ATAAAGTGGA ATTACGTATA
ATTCCCAATA CTCACGGCCC TGTGTCAGCA GAGGATATCA ACGCCTTACT TACACAGGCT
GCTTTTGCTA TGCTTTTTCC TATTACCCCA GCAATTACTA AAGCCGTAGC GGAAGTTAAT
GCCCTTTGCG GTCAAAACCC TGGGGATCAC GAACTATTTT TCGCCATTGC AGAGCGCAAA
GACGGTGTAG TGAATATCAA TGTCAGCGAC GATAAAATGC AAGCTAGCAT GAAAATCACT
TCAGCCTGGG GCGGCAAAGA TATCACCCTA CCAGATGTGC TTAATACCCT TAAAAATCAA
AAAATAAAAA TGGGATTGAG TAAACCTAAA ATCATGGCAC TCATGCAACG TTTGTCGATA
TTGCCACCAG GAGAAAGCTG TGAAGGCATC ATCGCCTGCG GCAAAGCGGC CGTTAACGGC
GAAAATGCGA TATTAACCCG TAAAGTTGCT TTAGCTCGTG AGCGCTTATT ACAACCACAA
GAACGTGAAG ATGGCTCAGT CGATATGCGT AATTTAGGCG CATTGATTAC CGTTAAGCCC
AACGATGTCT TGATGGTTAA AAACCCTTCA ACCATCGGTA CCCCTGGTTT TAATGTTCAC
GGCGATGTAC TGCAACAAAT TCCAGGTAAA GATAAACCAA TGGAACCTGG CACAGGCACC
AGCTTACACC CTAAAGATCA ACATAAACTC ATCGCAACAG TGTCAGGTCA ACCGGTTGAA
AATCGCAACG GTATGCAAGT TGACGATATG CTGCAAATTA AAGATGTAGA CGTGCGCTAT
GGTCACGTTA ATTTTAAAGG CAGTGTTTTA ATCACCGGCG ATGTACACGA AGGTATGGAA
GTAAAAGCTA GCGGTGACGT GACCGTGATG GGCTTTGTTG AGTCTGCTTC TATTGAAGCT
CAAGGTGATG TCATTGTCAG CAAAGGTGTT ATTGGCCGTT TAATTAAAGA GCACGAACTC
AGCACCAAAA TAAAAGCTAC CGGACAAATT TGTGCCCAGT TTGTGCAGTA TTCCCATTTA
GAGGCTCTCG GTAATATTCT GGTCACCAAG CAGTTACTTC ACAGTAACTC AACATCAGGT
GACACTATAA CCGTGAGTGA TCCACAAGGA AGACGTGGCG ACTTAGTCGG CGGCATTGCT
ACTGCGGCAA AAGGCATTAG AGCCATTGCA TTTGGAGCGA CTGCCGGCAC CAAAACTGAG
CTGTTTTGTG CCATGCATCA AGGTGAATTA AAGCAAGAGC TTAAAGAATT AGATGACAGC
ATTAAAGGCA TGGTTGTTGC GGGCTTAGAA ATTGAAGCAA GATTACGTAA ATTACCGCCC
AAAACCGAAT GGCAAAGCGA TGCCGGCATG ATTGAGCAAG TCAAAATGAT GCTCGATCAA
AAAAATCAAA TGGCAGAAGA ACGCATTAAA GAAGAAGTAG AATACACTCA ACATCTTAAC
GAAGTTGAAG GCTACTATAA TAATTACGTC ATCAAAGCTG AAAAACACAT TTTTACCAAC
GTCGAAATTC ATATAGGTGC TGCATTTAAT CGCAGCCAAC GTGAACATGG TCCGTGTATT
GTAAAAAACG TCAATCAAGA AGTATCATTC GATTACAGTA ATCGCTAG
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| Protein sequence | MLEPSLVALS ADKNKVELRI IPNTHGPVSA EDINALLTQA AFAMLFPITP AITKAVAEVN
ALCGQNPGDH ELFFAIAERK DGVVNINVSD DKMQASMKIT SAWGGKDITL PDVLNTLKNQ
KIKMGLSKPK IMALMQRLSI LPPGESCEGI IACGKAAVNG ENAILTRKVA LARERLLQPQ
EREDGSVDMR NLGALITVKP NDVLMVKNPS TIGTPGFNVH GDVLQQIPGK DKPMEPGTGT
SLHPKDQHKL IATVSGQPVE NRNGMQVDDM LQIKDVDVRY GHVNFKGSVL ITGDVHEGME
VKASGDVTVM GFVESASIEA QGDVIVSKGV IGRLIKEHEL STKIKATGQI CAQFVQYSHL
EALGNILVTK QLLHSNSTSG DTITVSDPQG RRGDLVGGIA TAAKGIRAIA FGATAGTKTE
LFCAMHQGEL KQELKELDDS IKGMVVAGLE IEARLRKLPP KTEWQSDAGM IEQVKMMLDQ
KNQMAEERIK EEVEYTQHLN EVEGYYNNYV IKAEKHIFTN VEIHIGAAFN RSQREHGPCI
VKNVNQEVSF DYSNR
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