| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0515 |
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| Symbol | |
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| ID | 4278648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 586896 |
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| End bp | 587573 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133273 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_749214 |
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| Protein GI | 114561701 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGATT TCATTTACAC CCCACCTACC ACCCCTTGGT TAGATATTGT GTATCAAGAC
AAGGATATTC TGGTCGCAAA CAAGCCCTCT GGACTACTTT CGGTTCCTGG AAGAGAAGCT
ATTTACCATG ACAGTATTTA TTCTCGAGTT TTAGCTGAAC ATCCAAATGC ACAAATTGTG
CACCGATTAG ACATGGCAAC CTCTGGAGTC ATTGTCGTCG CACTACGGCG CAGTGCTGAA
CGAGAATTAA AACGTCAATT TCGTGATAGA GAAACAGCCA AAACCTATTT TGCTCGAGTG
GCTGGTCATA TGAAATCCAA TATCTCGAAA GTCGATTTAC CACTAATTTG TGATTGGCCT
AATAGACCCA AACAAAAAGT CGACCACACA GTTGGTAAGC CTTCGGTGAC GTTAGTTGAA
GTCGTGAGCT ATGGTGCTAA GTCTACATTA GTCAAACTCA CTCCTATTAC TGGACGCTCA
CATCAGCTTC GAGTTCATAT GATGGCATTA GGCCACCCTA TTCTGGGTGA TGGATTTTAT
GCCGATCCTT TAGCAAAAAG CTTATCACCT AGATTACTCC TTCATGCAGC GGCATTATCG
ATAACTCATC CTTACTCTCA GCAAGTAATG CATTTTGAGT CACCCGTCAC GTTCATGACT
CCAACGGCGG ATCAATAA
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| Protein sequence | MADFIYTPPT TPWLDIVYQD KDILVANKPS GLLSVPGREA IYHDSIYSRV LAEHPNAQIV
HRLDMATSGV IVVALRRSAE RELKRQFRDR ETAKTYFARV AGHMKSNISK VDLPLICDWP
NRPKQKVDHT VGKPSVTLVE VVSYGAKSTL VKLTPITGRS HQLRVHMMAL GHPILGDGFY
ADPLAKSLSP RLLLHAAALS ITHPYSQQVM HFESPVTFMT PTADQ
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