Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0500 |
Symbol | |
ID | 4278580 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 566627 |
End bp | 568258 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638133257 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_749199 |
Protein GI | 114561686 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.667013 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCAGT CAGCCACTGA GGCAGATGCA TCGCAAGTCG GCCCTGTAAG TACTGTGGAT GATAAACCGA CCGGTTATCA GCGCGGTAGC ACACGTTCTT GGATTGCTGT TGCTGGCGGT TTAATCGGTG CTTTTATGGC GATTTTGGAT ATTCAAATCA CCAACGCGTC GATGAAAGAG ATTCAGGGCA GTTTAGGGGC GACGCTAGAA GAGAGTAGCT GGATTGCCAC TGCTTATTTA GTAGCCGAGA TGATTGCCAT TCCTTTATCT GGTTGGTTAA GTACTGGTTT ATCTACTCGT CGTTACTTAC TGTGGACTAC TGCTGCCTTT ATCGTTGCCT CTGTATTGTG CTCAATGTCT TGGAACCTTG AGTCGATGAT CGCTTTTCGT GCCTTGCAGG GTTTTTTTGG CGGGGCATTA ATTCCGTTAG CTTTTCGATT AATTCTTGAG TTTTTACCCG ACGACAAACG CGCCATGGGT ATGGCTCTGT TTGGAGTAAC CGCAACATTT GCGCCTTCTA TTGGGCCAAC ATTAGGAGGT TGGTTAACCG AACAATTTAG CTGGCACTAT TTATTTTATA TTAATGTTCC GCCAGGTTTA TTAGTGATGG CGATGTTGGC TTATGGTTTA GAGCGCAAAC CGATTATTTG GGACAAGTTA AAAGACGCCG ATTATTCTGG CATTGTTACC ATGGCGTTGG GTATGGGCTG TTTAGAAGTC GTGTTAGAAG AGGGCAATCG TAAAGACTGG TTTGGGTCAG ATCTTATTCG TAATCTTGCC ATTATTGCCG CGGTTAATAT CAGTTTATTT ATTTGGATCC AATTACGTAA AGCTCAGCCA TTAGTGAATA TTCGTCTGCT TGCGCAGCGA GATTTCGCTT TATCCACTGT GGCGTATTTC TTACTGGGTA TGGCGTTGTT TGGGGCGATC TACATGATCC CGCTGTATTT ATCACAAATT CATGATTATA CCCCGTTAGA AATTGGTGAA GTCATTATGT GGATGGGCTT CCCGCAGTTA CTCGTACTGC CATTAGTGCC TAAATTAATG CAGAAGTTTG ATCCGCGATA TTTGGCAGCA CTTGGATTTG CTTTATTTGC GACCAGCTAT TATATGAATA GCCATATGAC CATTGATTTC GCAGGCGATC AGATGATTGC TTCGCAAATC GTACGGGCGT TAGGGCAACC GTTTATTTTA GTACCTATTG GTATTTTGGC GACAATGCAT CTTCAAGCAC ATGAAAATGC CTCTGCATCG ACGGTACTCA ATGTGATGCG AAATTTAGGT GGGGCTTTTG GTATCGCGCT GGTTGCAACC TTAACTGATA ATTTAGCCCG AGTTCATTTG GCCCATATTA AAGAAACGTT GCCGACTGTC AGCTCCCAAG CTTACAACTA TATTCAGCAT ACCAGTTCGA TATTGCAAAC TGCGGGTTCT GATGCGGTGA GTGCTAACTC ACAAGCCTAT GCTTTACTTG CTAAAAATAT GTCACAACAA GCATATATAC AAGCCTATAA TGATGTGTTT TTTATTATGG CATGTTTTCT ATTTATTGCG GTTGTGGCGG TTTTATTGAT CCGTAAACCT GCGGTGAAAA GTGATACAGA TCAACCTAAT GAAATGCATT AA
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Protein sequence | MNQSATEADA SQVGPVSTVD DKPTGYQRGS TRSWIAVAGG LIGAFMAILD IQITNASMKE IQGSLGATLE ESSWIATAYL VAEMIAIPLS GWLSTGLSTR RYLLWTTAAF IVASVLCSMS WNLESMIAFR ALQGFFGGAL IPLAFRLILE FLPDDKRAMG MALFGVTATF APSIGPTLGG WLTEQFSWHY LFYINVPPGL LVMAMLAYGL ERKPIIWDKL KDADYSGIVT MALGMGCLEV VLEEGNRKDW FGSDLIRNLA IIAAVNISLF IWIQLRKAQP LVNIRLLAQR DFALSTVAYF LLGMALFGAI YMIPLYLSQI HDYTPLEIGE VIMWMGFPQL LVLPLVPKLM QKFDPRYLAA LGFALFATSY YMNSHMTIDF AGDQMIASQI VRALGQPFIL VPIGILATMH LQAHENASAS TVLNVMRNLG GAFGIALVAT LTDNLARVHL AHIKETLPTV SSQAYNYIQH TSSILQTAGS DAVSANSQAY ALLAKNMSQQ AYIQAYNDVF FIMACFLFIA VVAVLLIRKP AVKSDTDQPN EMH
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