Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0444 |
Symbol | |
ID | 4278142 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 508622 |
End bp | 509866 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133202 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_749144 |
Protein GI | 114561631 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.249159 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGATTACT TTTCATATCA AAATAATTCA CTATTCGCAG AAGACTGCGA TGTAGCAAAA CTGGCCAAAA CTCACGGTAC GCCGCTGTAC ATTTATTCTC GTGCCACATT AGAGCGCCAT TGGCATGCCT TTAATAATGC CGTTGCTGAT CATCCGCATC TTATTTGTTA TGCAGTGAAG GCGAATTCAA ACCTTGCGGT ATTAAATGTA TTGGCTCGCT TAGGCAGTGG CTTTGATATT GTGTCTGGCG GTGAACTCTC ACGTGTGCTG CAAGCTGGCG GCGATCCTAA AAAAGTGGTT TTCTCTGGTG TGGGCAAAAC CGTTGCCGAA ATGGAGCAAG CTCTTAATAT TGGCATTTAC TGTTTTAATG TCGAGTCAAG TGCCGAACTT GAACAGCTTA ATGAGGTCGC GAGCCGCTTA GGTAAAGTGG CACCTGTTTC ATTGCGAATT AATCCAGATG TTGATGCCGG TACTCATCCT TATATTTCGA CGGGCCTTAA AGAAAATAAA TTTGGTATCG CCATGGAAGA AGCTGAAGTG GTTTTTGCCC GTGCAGCAGA ATTAGCTCAT TTACATGTTA AGGGTGTGGA TTGCCATATT GGTTCACAGC TCACCGAAAT AAAGCCATTC TTAGATGCCA TGGATCGCAT GCTTGCATTG ATCGATCGTT TAGGCGAACA AGGTATCCAA ATTGAACACT TTGATGTGGG TGGCGGCTTA GGGGTAACAT ATAACAGTGA AACTCCACCA CATCCAGACG CATATGCCGC TGCATTACTC GAGCGCTTAA ATGGTCGTAA ATTGAAGTTA ATTTTTGAAC CTGGCCGTGC TATAGCCGCC AATGCGGGTA TTTTTGTCAC TCAAGTACTT TATCTGAAAG AAAACAGCGA TAAGCGTTTT GCGATTGTTG ATGGTGCAAT GAATGATCTT ATTCGTCCGT CGCTTTATAG CGCATGGCAA AATATTATTC CGGTACAACA AAATGATGCG CCAACTTTTG CTTATGATAT TGTAGGCCCA GTATGCGAAA CGGGTGACTT TTTGGGAAAA GACAGACAGT TAGCGGTAAA GTCGGGTGAC TTATTAGCGA TACGTTCAAG TGGCGCTTAT GGTTTTGCTA TGGCCTCAAA TTATAATTCT CGCCCAAGAG TGGCTGAAAT TATGGTTGAT GGTGGTAATG ATTTTGTTGT TCGTCAGCGT GAAACGCTAG AACAACTTTG GCAAGGCGAA CATTTACTGC CATAG
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Protein sequence | MDYFSYQNNS LFAEDCDVAK LAKTHGTPLY IYSRATLERH WHAFNNAVAD HPHLICYAVK ANSNLAVLNV LARLGSGFDI VSGGELSRVL QAGGDPKKVV FSGVGKTVAE MEQALNIGIY CFNVESSAEL EQLNEVASRL GKVAPVSLRI NPDVDAGTHP YISTGLKENK FGIAMEEAEV VFARAAELAH LHVKGVDCHI GSQLTEIKPF LDAMDRMLAL IDRLGEQGIQ IEHFDVGGGL GVTYNSETPP HPDAYAAALL ERLNGRKLKL IFEPGRAIAA NAGIFVTQVL YLKENSDKRF AIVDGAMNDL IRPSLYSAWQ NIIPVQQNDA PTFAYDIVGP VCETGDFLGK DRQLAVKSGD LLAIRSSGAY GFAMASNYNS RPRVAEIMVD GGNDFVVRQR ETLEQLWQGE HLLP
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