Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0440 |
Symbol | hemC |
ID | 4278138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 504270 |
End bp | 505199 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638133198 |
Product | porphobilinogen deaminase |
Protein accession | YP_749140 |
Protein GI | 114561627 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0181] Porphobilinogen deaminase |
TIGRFAM ID | [TIGR00212] porphobilinogen deaminase |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTGAAA ATATAATTCG TATCGCAACA CGTAAAAGTC CACTTGCAAT GTGGCAAGCT GAATTTGTTA AAGCTGAGCT TGAGCGCATT CATCCTGGGC TTACGGTTGA GCTATTGCCA ATGAGTACTA AAGGTGATGT CATTTTAGAT ACTCCTTTAG CTAAAATCGG TGGCAAAGGC TTGTTTGTTA AAGAGCTGGA AGTTGCCATG CTTGAAAATC GCGCCGATAT TGCTGTGCAT TCCATGAAAG ACTTGCCGGT AGAGTTTCCA GAAGGTTTGG GCTTACAAGT GATTTGTGAA CGTGAAGACC CGCGTGATGC ATTTGTGTCA AACAATTATA AATCTATCAG CGAATTACCT CAGGGCGCTG TGGTAGGTAC ATCAAGTTTA CGCCGTCAGT GCCAAATTAG AGCTGCTCGC CCTGATTTAG TTATCAAAGA TTTACGCGGA AATGTCGGTA CTCGTTTAGC CAAGCTAGAC AGTGGTGACT ATGATGCGAT TATTTTAGCG GCCGCCGGAT TAATTCGCTT AAAGCTAAAC GAACGTATCG CTAACTTTAT TTCTGCCGAA GAATCACTGC CAGCCAATGG CCAAGGTGCG GTAGGAATTG AGTGCCGTAC TGATGATGCG CGAGTTAAAG CGTTATTAGC GCCACTAGAA CATTTAGAAA CCCGTTATAG AGTGCTTGCT GAACGAGCAA TGAATACTCG TTTAGAAGGC GGATGCCAAG TTCCTATTGG TGCTTTTGCT GAAATAAACG GTGATAATTT AACTCTACGT GGTTTAGTTG GTAATCCTGA TGGCAGCCAA ATCATTATAG GCACTGTCTC GGGTTCTAAG ACCGATGCGG TTGCACTTGG GGAATCGCTT GCAGAGGATT TACTGAGTCG CGGTGCTAAA ACTATTTTAG ACGCTGTGTA TGCCAGTTAA
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Protein sequence | MSENIIRIAT RKSPLAMWQA EFVKAELERI HPGLTVELLP MSTKGDVILD TPLAKIGGKG LFVKELEVAM LENRADIAVH SMKDLPVEFP EGLGLQVICE REDPRDAFVS NNYKSISELP QGAVVGTSSL RRQCQIRAAR PDLVIKDLRG NVGTRLAKLD SGDYDAIILA AAGLIRLKLN ERIANFISAE ESLPANGQGA VGIECRTDDA RVKALLAPLE HLETRYRVLA ERAMNTRLEG GCQVPIGAFA EINGDNLTLR GLVGNPDGSQ IIIGTVSGSK TDAVALGESL AEDLLSRGAK TILDAVYAS
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