Gene Sfri_0440 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0440 
SymbolhemC 
ID4278138 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp504270 
End bp505199 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content44% 
IMG OID638133198 
Productporphobilinogen deaminase 
Protein accessionYP_749140 
Protein GI114561627 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0181] Porphobilinogen deaminase 
TIGRFAM ID[TIGR00212] porphobilinogen deaminase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAAA ATATAATTCG TATCGCAACA CGTAAAAGTC CACTTGCAAT GTGGCAAGCT 
GAATTTGTTA AAGCTGAGCT TGAGCGCATT CATCCTGGGC TTACGGTTGA GCTATTGCCA
ATGAGTACTA AAGGTGATGT CATTTTAGAT ACTCCTTTAG CTAAAATCGG TGGCAAAGGC
TTGTTTGTTA AAGAGCTGGA AGTTGCCATG CTTGAAAATC GCGCCGATAT TGCTGTGCAT
TCCATGAAAG ACTTGCCGGT AGAGTTTCCA GAAGGTTTGG GCTTACAAGT GATTTGTGAA
CGTGAAGACC CGCGTGATGC ATTTGTGTCA AACAATTATA AATCTATCAG CGAATTACCT
CAGGGCGCTG TGGTAGGTAC ATCAAGTTTA CGCCGTCAGT GCCAAATTAG AGCTGCTCGC
CCTGATTTAG TTATCAAAGA TTTACGCGGA AATGTCGGTA CTCGTTTAGC CAAGCTAGAC
AGTGGTGACT ATGATGCGAT TATTTTAGCG GCCGCCGGAT TAATTCGCTT AAAGCTAAAC
GAACGTATCG CTAACTTTAT TTCTGCCGAA GAATCACTGC CAGCCAATGG CCAAGGTGCG
GTAGGAATTG AGTGCCGTAC TGATGATGCG CGAGTTAAAG CGTTATTAGC GCCACTAGAA
CATTTAGAAA CCCGTTATAG AGTGCTTGCT GAACGAGCAA TGAATACTCG TTTAGAAGGC
GGATGCCAAG TTCCTATTGG TGCTTTTGCT GAAATAAACG GTGATAATTT AACTCTACGT
GGTTTAGTTG GTAATCCTGA TGGCAGCCAA ATCATTATAG GCACTGTCTC GGGTTCTAAG
ACCGATGCGG TTGCACTTGG GGAATCGCTT GCAGAGGATT TACTGAGTCG CGGTGCTAAA
ACTATTTTAG ACGCTGTGTA TGCCAGTTAA
 
Protein sequence
MSENIIRIAT RKSPLAMWQA EFVKAELERI HPGLTVELLP MSTKGDVILD TPLAKIGGKG 
LFVKELEVAM LENRADIAVH SMKDLPVEFP EGLGLQVICE REDPRDAFVS NNYKSISELP
QGAVVGTSSL RRQCQIRAAR PDLVIKDLRG NVGTRLAKLD SGDYDAIILA AAGLIRLKLN
ERIANFISAE ESLPANGQGA VGIECRTDDA RVKALLAPLE HLETRYRVLA ERAMNTRLEG
GCQVPIGAFA EINGDNLTLR GLVGNPDGSQ IIIGTVSGSK TDAVALGESL AEDLLSRGAK
TILDAVYAS