| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0434 |
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| Symbol | |
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| ID | 4278411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 479653 |
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| End bp | 481035 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133192 |
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| Product | type I secretion membrane fusion protein, HlyD family protein |
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| Protein accession | YP_749134 |
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| Protein GI | 114561621 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAGC ATCTTACCGT AGCCGACTTA GAAATGGTTG ATGACGTTTA TGGTGCCATG
ATGACCGATG CCCCGTCAGG ACATCGTCTT ATCATTTGGT CACTGGCCGC CATGATGGTG
TGTTTTTTTA TTTGGGCTTA CTTCTCCGAA TTAGATCAGG TGACATCAGG AACCGGTAAA
GTGATTCCGT CTTCACAGAT TCAAATTATC CAAAGTCTAG ATGGCGGAAT TTTACAGGAA
ATCTATGTCC AAGAAGGGGG GATAGTCACT AAAGGACAAC CTTTAGCCCG GATTGACGAC
ACTCGGTTCC GCTCAGATTT CGACCAACAA GAACAAGAAG TGTTCGGATT ACAAACTAAT
ATTATTCGCA TGCGCACTGA ATTAGACAGT ATTATTATTT CAGATATGTC TTCAGACTGG
CGCCAACAGG TAAAAATAAC CAAACAGAAC TTGGTATTTC CGCAGACCAT TATTGACGAA
GAGCCAGAAC TGGTTAAGCG TCAACAAGAA GAATATTCGA TTCGATTGGA TAATTTAAGC
AACCAATTAG AAATTCTTGT ACGTCAGATC CAACAGCGCC AACAAGAAAT TGAAGAGTTA
GCCTCTAGAA TTAGTACCCT TACGACAAGT TATCAATTAG TATCTCGCGA GCTTGAGTTA
ACTCGCCCAT TGGCTCGTAA AGGCATTGTT CCTGAAGTTG AACTGCTCAA ACTTGAGCGT
ACGGTAAATG ATATTCAAGG TGAACTACAA TCGGTTAGAC TCTTGCGTCC AAAAGTGAAA
GCGTCTATGG ATGAAGCCAT CTTAAAGCGC CGAGAAGCCG TATTTGTTTA TGCCACTGAT
TTACGTGCAC AGCTTAATGA AATGCAAACC AAATTATCAC GTATGAATCA GGCGCAAAAA
GGCGCATTTG ATAAGGTCAG TAAAGCTGTC ATTGCCTCTC CGGTTATAGG AACAATTAAA
AAAATTAACT TTAATACCTT AGGTGGCGTT GTGCAGCCAG GCGAAGAGAT TATGGAAATT
GTTCCATCAG AAGATAAACT GCTGATAGAA ACCAAAATCA CTCCTAAAGA TATTGCTTTT
TTACATCCAG GATTACCCGC TATCGTAAAA GTCACCGCAT ATGACTTTAC CCGTTATGGC
GGGCTAAAAG GAACCGTTGA ACACATTAGT GCCGATACAT CACAGGATGA AGAAGGCAAC
AGCTTCTATA TTGTAAAAGT GCGAACACAA GAATCCAGTT TAATGAAAGA CGATGGCACA
GAGATGCCAA TAATCCCTGG AATGCTCACA TCAGTAGATG TCATTACGGG AAAGAAATCC
ATACTTGAGT ACATTTTAAA TCCAATTTTA AGAGCGAAAG ATACCGCCCT TAGAGAGCGC
TAA
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| Protein sequence | MSKHLTVADL EMVDDVYGAM MTDAPSGHRL IIWSLAAMMV CFFIWAYFSE LDQVTSGTGK
VIPSSQIQII QSLDGGILQE IYVQEGGIVT KGQPLARIDD TRFRSDFDQQ EQEVFGLQTN
IIRMRTELDS IIISDMSSDW RQQVKITKQN LVFPQTIIDE EPELVKRQQE EYSIRLDNLS
NQLEILVRQI QQRQQEIEEL ASRISTLTTS YQLVSRELEL TRPLARKGIV PEVELLKLER
TVNDIQGELQ SVRLLRPKVK ASMDEAILKR REAVFVYATD LRAQLNEMQT KLSRMNQAQK
GAFDKVSKAV IASPVIGTIK KINFNTLGGV VQPGEEIMEI VPSEDKLLIE TKITPKDIAF
LHPGLPAIVK VTAYDFTRYG GLKGTVEHIS ADTSQDEEGN SFYIVKVRTQ ESSLMKDDGT
EMPIIPGMLT SVDVITGKKS ILEYILNPIL RAKDTALRER
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