| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0430 |
|---|
| Symbol | |
|---|
| ID | 4278407 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 474956 |
|---|
| End bp | 476878 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638133188 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_749130 |
|---|
| Protein GI | 114561617 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.612077 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGT TCAGGCAGAT CTATGCGTTA CTTTTCGGGC TTTTCTTGTT AACGATTGCA
AGCGTAGCCT ATGTACAATT TTCAGAAACC CAAGGTTTCT TATCCAAACA AATGGAATCT
GACCTCAATA ATGCCAGTAA TTCATTAGGA TTAATGCTTA CTCCTGTTTT AGAGGCTGGT
GATGATGCCG GTGCAGAAAC ATTAGTGAAT GTTATTTTTG AAGGCGGCTA TTATCAACAA
ATCAAATTGA CTTGGTTGGT AGATGGTAAG CAACAAGTGT GGAATAACTC TGTTAAAGTC
GATAATATTC CTCAATGGTT TATCAATCTT AACCTGTTTA AAACCATTAA AAAACAAACC
ACTATTACCT CTGGTTGGTT ACAGCTTGCT ACACTTGAAA TTACAGCTCA CCCAGGGTTT
GGCTATCAGG AATTATGGCG GATTATTTCC GACATAATTA TTCTATTTTC AATCTTATTT
CTTATCGCCA TTATATTTGC GCGAGTGGGA TTAAGCTGGA TTTTAAAACC TTTAAACACA
CTTTCCTTAC ATGCCAAGCA AATAGCAGCA CAACAATTTG GCCCCGATAT GCCAACGCCA
AAAACGAGGG AGCTTAAAGA GCTAGTCAAC GCATTTAACA GTATGTCAGC GCAATTAAAA
CAAGTATTTA ATTCTCTTGA CGAAGAAGTC TCTGCATTAA GAAAGAAAAA TCTTGTTGAT
CAAGTCTCAG GGCTACCAAA TAGACAATAT ATGGTCAGTC GAGTTAATGG TTGGTTAAGC
GAACCCAGTA CAGGCGCACT TTACTTAGTC AAAATGGATT GGCTAGAGGA TGTACATAGC
AAATACGGTT TCCAAGTTCG CGATGAGACT ATTCGCATAC TGGCTGAAAA GCTGCAACAT
CATCAAGATG AAATAGCTTC TTCTGTTATC GCCCGTATTG CAGCGTATGA ATTCGCCTTC
CTTGTTGAAG ACTGTGAACA TGACCAACTG GCTAAGTATT TACAAAGCCT CATACGTACT
GTTAATAAAG AAATATCTAA AGCTGGCTGT AAACCAAACG AACAGTTTTA TATTGGTGTC
GCAGAACGTC TAGGACAAAT GACAGTGTCA GATATGTTGG CACAAGCAGA TAACGCACTC
CAGCAGTCCA TTAAAGACGA CAAAGTGTTC CATTGGTTTG AGAACACCCA AAAGCAGCTG
TTTACCCGTG AAGAATGGCG CAATAATTTA AGTCATGCCA TAAAGAACAA AAAATTCCAA
TTTCGTTGGC AGTCGATCCA ACTTTGTGCC AAAGATGAAA TTTGTCAGCG TGAGCTATAT
TGCCAACTGC AAATTGGCGA CACAATCTTG CACGCAGGTC AGTTTGTACC ATACATAGAA
TTACTTTCAC TAGGCACTAT GTTCGATCGT TGTTTAATAG AAACAGTCAA TGAACATCGT
TTACTCGAGC GCAATTATGA ACGCGTCGCC ATCAACCTTA CTTATCAGAG CATAAGCGAT
GTTGATTTTC ATCTTTGGCT AAAACAGTTT CTTCGGGCAA ATAAATACGC TGAACGTATT
TGCTTTGAAA TCCCAGAGGC GAGTGTATAT AGCGATTTAG AATCTTGCGA AAATCTCTGC
AAAGTCATTC GAGATTCTGG TGCTCAGTTT GGTATCGATC ATTTTGGCCG TCAATTCGGC
TCAATGGCCT ACTTACAAAG CCTGCGTCCA AATTATGTCA AACTAGACCA GTCATTTGCT
TATATTGAAG AGAATCAACA CAACAGTGAA TTATGTCGTG CTTTAGTGAA TGTAGCTAAA
GGATTAGATA TTCAAGTGAT TGTCACGGGG ATCCAAGAAG CAAAGCAGTT AACACGATTT
ACTGAACTCA GAGTCGATGC TTATCAAGGC TTTATTGTAC CGCCGGTCAA TGTGAAGCTC
TAA
|
|---|
| Protein sequence | MTLFRQIYAL LFGLFLLTIA SVAYVQFSET QGFLSKQMES DLNNASNSLG LMLTPVLEAG
DDAGAETLVN VIFEGGYYQQ IKLTWLVDGK QQVWNNSVKV DNIPQWFINL NLFKTIKKQT
TITSGWLQLA TLEITAHPGF GYQELWRIIS DIIILFSILF LIAIIFARVG LSWILKPLNT
LSLHAKQIAA QQFGPDMPTP KTRELKELVN AFNSMSAQLK QVFNSLDEEV SALRKKNLVD
QVSGLPNRQY MVSRVNGWLS EPSTGALYLV KMDWLEDVHS KYGFQVRDET IRILAEKLQH
HQDEIASSVI ARIAAYEFAF LVEDCEHDQL AKYLQSLIRT VNKEISKAGC KPNEQFYIGV
AERLGQMTVS DMLAQADNAL QQSIKDDKVF HWFENTQKQL FTREEWRNNL SHAIKNKKFQ
FRWQSIQLCA KDEICQRELY CQLQIGDTIL HAGQFVPYIE LLSLGTMFDR CLIETVNEHR
LLERNYERVA INLTYQSISD VDFHLWLKQF LRANKYAERI CFEIPEASVY SDLESCENLC
KVIRDSGAQF GIDHFGRQFG SMAYLQSLRP NYVKLDQSFA YIEENQHNSE LCRALVNVAK
GLDIQVIVTG IQEAKQLTRF TELRVDAYQG FIVPPVNVKL
|
|---|
| |