Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0429 |
Symbol | |
ID | 4278406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 470901 |
End bp | 473525 |
Gene Length | 2625 bp |
Protein Length | 874 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638133182 |
Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
Protein accession | YP_749129 |
Protein GI | 114561616 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATACTG CAATAAGTCA CTCAATAGCT TCTCCACGAG TCGAGCATCT GCAAAAAAGG ATAGCTCGTT TAAAGCGTTT GGCTAAAAAA TATAAGCGTT CTGAAATTAT TCAAAACGCT TTACTGGGTA TTTCCAATAT TGCGACCCAG GTCACTTCTC TTGATGATTT TTATCAACGA GTACACTTAC ATCTGCAGCA ACTTATCCCT GCTGAGAACT TTTTTATTGC CTCTCAAGAC CCTAAAACCG GACTGACGAG TTTACCTTTT TTTGCCGACC AACAAGATTC TCACCCAACG GAACTCTACC CAGACCAAGA AATATCGGCA TTACTCAATA GTGGCTTAAC AGGTTATGTG CTCCGTAATG GCACACCTTT ATTATGCGAC GATATTAAGT TTAATGAATT GATCGCCAGT GGCGATATTA AAAGTCTAGG CTCTCCAAGT CACCAATGGC TCGGTGTCCC CATCAAGAAC CAGGAAATCG TCAGTGGTGT ACTTGTTGTG CAAAGCTATA ACGAAGCCAA TACTTACGGT GAACTTGAAT TAGAATTAAT GGGTTTCATT TGTCATCATA TTTCTGGGGT TATGGAACGG CTTGAGCATC ATGAACAGCT AGAACAAGCT ATTGTTGAAC GCACTAAAGA ACTCAGCCAG GCTTATGAAA AAGTCAAAAA AGAAATAACT GAGCGCGTTA AAGCCGAAAA ATTACAAAAA GCTTTATTCG AAATTGCCGA TCTATCTGCA TCAAATGTAC TCCAACAAGA CTTCTATTTA CGACTTCACA CTATTATGAG TCAATTAATA CCGGCTGATA ACTGCTTTAT CTCATTGATA AACGATAACA ATATGTTGTC ATTTCCTTTT TATGTTTCGC AGATGACAAC CGAATATCCA GCCTCTCGTC CTATGCAGGA TGGGCTAACA GAATACATTC TAGAACATAA GTTGCCTCGG CTCTTATCCT CTAAAGATAT CGCTGATATG GTTGCTAATG GCGAAATATA CGCAAAATCT CCAGAATTGA ACAAAACCGA TAGAATGCAT CAATGGATAG GCATTCCGCT GATCATTAAT GGTGATATTG CTGGTGCGTT AACGATTTAT AGCTTGGATG ACGCTCATAT TTATCAATTT AAAGATCTAG AGCTACTGAC ATTCGTATCC CAACATATGG CCAACGCTAT TGAGCGTAAA TTGGCGACTG AATCGCTCAA AAACAGCCAT GAGCAGCTAG AAGATAAGGT GGTTAAACGC ACTAAAGCAC TCGCTGAACT GAACAACAAT CTTCAACAAG AAATCAATCA GCGCCGTAAG ATTGAAAATC AGCTCTTACA CGATGCTCAG CATGATGGGC TGACTGGTTT ACCCAATCGC AGCTATTTAA TGGAACGATT ATCACAAGCA TTAAAACACT TGCGCCGACA TGGATTAGAT CAATTTGCAT TATTATTTAT CGATCTTGAT CGGTTCAAAG TGATCAATGA TTCTTTTGGT CATCTCGAAG GCGATCGCTT TTTAATTGAA ACCGCACAAC GTATCAAGTC ATGTGTGCGT GAAAACGACA CACTAGCAAG AATGGGCGGT GATGAATTTG TTATTTTGCT GGATTCTATT AACGCCACGG AAGATGCTAT CGAGGTAAGT GATCGTATTT TACAAGCGTT GTCGATGCCC TATCAGCTCG CCAAACAAGA GTTCATCTCA GGTGCCAGTA TCGGAATTGC ATTTAGTGGA CGCAATAAAT TAGTCACCAG CGAGTCACTA CTACGTGATG CTGACGCTGC CATGTATCAG GCTAAAGCCA ATGGTAAAGG TTGTTATGTT ATTTTTGACG ACAAACTCAG CGCACAATCT AAGCTACAAC ATGAATTGGA AATTGATTTT AAAAAGGCCT TAGACCAACA AGAATTTAAA ATTAACTACG TTGAAGTGGT CGATTTTACT ACTGGTGAAA TCATTGCCAT TGAACCTCAC ATTGAGTGGC ATCATCCTGA GCAAGGCTTA ATTGAACATG GCAAGATGAA GCAGCTTGCC GCACAATACC AGCTCACACT TAATATAGAC GGTTATATAT TTTCTAACTT AAATGAGCAA TATCAGTTTC TTAAATCAAA ACATGGACCG TCTGTATACT TACATCTATC CATTAGCAGC CAGCATATCA AAAATAAATT CGTATTACGC AATCTCAAAC AAACCATTAA AAGTAGTCAC ATCAATCTTG AGAAATTAAT CTTATTCTTT AACGAAAAAG CACTAGTGCA AGACACCGAA AATCACATCA ATGGCTTCGA GCTTATCTCG CAACTGGGCG TGCAAATCGG TATCGATGGC TATGGCACAG GTTACAGCTC ACTCAGTTGC CTGAGTTTTT TACCAATTAA GGCATTAAAG CTAGATGATG ACATCAGTAA GCATTTACTC AATGACAAAC AGTTACAATT AGTCAAAGCT TACCAACTGA CGGCACAAAC ACTTAATTTC GATATGTACG CCACCACAGT AGACACACAA CAACAAGTAA GGCAGTTTTT AGAACTTGGC TATGTACGTG GCCAAGGCCG AGCAATCAGT AAATTATTTA ACGAAAAAAA AAAGCCACAT AAGGCCTGTG CCTAA
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Protein sequence | MDTAISHSIA SPRVEHLQKR IARLKRLAKK YKRSEIIQNA LLGISNIATQ VTSLDDFYQR VHLHLQQLIP AENFFIASQD PKTGLTSLPF FADQQDSHPT ELYPDQEISA LLNSGLTGYV LRNGTPLLCD DIKFNELIAS GDIKSLGSPS HQWLGVPIKN QEIVSGVLVV QSYNEANTYG ELELELMGFI CHHISGVMER LEHHEQLEQA IVERTKELSQ AYEKVKKEIT ERVKAEKLQK ALFEIADLSA SNVLQQDFYL RLHTIMSQLI PADNCFISLI NDNNMLSFPF YVSQMTTEYP ASRPMQDGLT EYILEHKLPR LLSSKDIADM VANGEIYAKS PELNKTDRMH QWIGIPLIIN GDIAGALTIY SLDDAHIYQF KDLELLTFVS QHMANAIERK LATESLKNSH EQLEDKVVKR TKALAELNNN LQQEINQRRK IENQLLHDAQ HDGLTGLPNR SYLMERLSQA LKHLRRHGLD QFALLFIDLD RFKVINDSFG HLEGDRFLIE TAQRIKSCVR ENDTLARMGG DEFVILLDSI NATEDAIEVS DRILQALSMP YQLAKQEFIS GASIGIAFSG RNKLVTSESL LRDADAAMYQ AKANGKGCYV IFDDKLSAQS KLQHELEIDF KKALDQQEFK INYVEVVDFT TGEIIAIEPH IEWHHPEQGL IEHGKMKQLA AQYQLTLNID GYIFSNLNEQ YQFLKSKHGP SVYLHLSISS QHIKNKFVLR NLKQTIKSSH INLEKLILFF NEKALVQDTE NHINGFELIS QLGVQIGIDG YGTGYSSLSC LSFLPIKALK LDDDISKHLL NDKQLQLVKA YQLTAQTLNF DMYATTVDTQ QQVRQFLELG YVRGQGRAIS KLFNEKKKPH KACA
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