| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0392 |
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| Symbol | |
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| ID | 4278232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 423365 |
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| End bp | 425518 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133146 |
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| Product | TonB-dependent receptor, plug |
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| Protein accession | YP_749093 |
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| Protein GI | 114561580 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.829697 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTATTTA AGCCTAGCCA ATTGGCTATT GCGACACATT GTGCATTATT TTTATTAGTA
CTCCCCGTAA CTCATGCCAA TGCAGAATCT TCAACACAAG CCACAGAAAA CCAAACTTCA
ATGGAGCGAA TGATTATTAC TGGTAGTCGC TCTGCTGAAC GGATAGAGGA AGTCCCTTCT
TCAGTCACGC TTATTGAGCA ACAAACCCTC GCACAAGACA TGTTAATGAC TTCGCAGTTA
CAAAACTTAC TCGCATTTCG CGTTCCTGGA TTAGCGCCAA GCACTGGCAC ATCAAGTAAC
TCGGGACAAA ACTTACGCGG TCGTGCCGCA CTAGTCATGA TTGACGGCGT GCCACAATCT
ACCCCATTAC GAAATGGAAA ATTAGGCATA AGCTCTATCG ATGCAGGGGT CATTGAGCGT
ATTGAAGTGA TTAAAGGAGC GACCTCAATT TATGGCAATG GCGCTTCAGG CGGCATCATC
AACTACATCA CTAAACGAGC CAGTGAAGAT AAAGCACGAG TTAAGGTTGG GGCTTCCAGT
AAATTTAGTG CGGTAAAATT ACAAGACAGT GCCGGTTATC GAGTGGATAC ATCAATAGAC
GGCACGGTTG ATAATTTCAG TTACGTATTT AGTGCCATTA CCGAAAAAAC AGGTGTTGAA
CGTGATTCAG AAGGTGACGC TATCGGATTA GTCTATGGTT TATCAGAAAC TAAATCGAAT
AATTATTTTA CCAAACTCGG CTATCAACTC GACGACGACA AGTCGATTCA ACTGACGTAT
AACTACTACG AAGCCCAACA AGAATCTGAC TACATAGATG TTGTTGGCAA TGCTAACACA
GGCGAAAAAA CTTACTCGAT AGACAATACT ACTGGGATTG TAAAGCTGGG CGTACCTCAA
GGGCCGCGTG GCAATCATAA CCTAATGTTA AAATACGTCG ACCAAGATAT ATTCACTAAC
ACCCAATTAA CCGTTGATGG TTATCTGCAA AAAATTGAAA ACATGTTTTT CTTTTCAACT
GCACTAGCTA ACCTAAGCGA AGGTTACGAA GGGGGACAAT CATTCATCAA GTCAGAAAAG
AAAGGCTTAC GCGTTAACTT TGCTACCCAA GTTGATTGGG ATAATGTTGA ATCAACCTTC
ATTTACGGTA TTGATGCGCT GCAAGACATC AGTTCACAAC CATTAGAAGA CGGCCGAATT
TGGGTGCCTG AAATGGACAT GCGTAACTTA GCGGTTTATT TACAAACTAA GTTTGTTATT
GCCGATGATT GGGTTATTAA AGCCGGTATC CGCCAAGACA GTGTTGATTT AACGGTCGAT
GATTATCAAA CCTTAAAACT TTGCCGAACG CCAAGTACGT GCTCAGTACC TTTTGATGTC
ACAGGCGGAG AATTAACATA TAACTCAACC ACCTATAATA TTGGCTTACG TTACAATATG
AACGAGTTTT TTAACCCGTT TATGAGCTTT TCCCAAGGTG CAGATATTTC AGATATTGGC
CGTCTTTTAC GAACCGCCAC TGTCGATGAT ATTGCGTTAA TCCGCACTGA ATCATCGATT
GTTGATAACT ATGAAATCGG CTTTTCTGGC CAACTTGGTG ATCTGAATTA TGAAATTGCC
GCCTACCGAA GTAAGTCAGA ATTAGGCACA AGTAACAGCT TTGATGCAAC AACAGGCATT
TACTTACCTG TACGCGCACC ACAAAAAATT TGGGGTTACG AAGCACAAGT TGACTATCGA
GTGTTAGATA ATCTCAATAC AGGTTTAAGC TATAGTTGGG TTGAAGGTAA AGACACTGAA
ACGGATACTT ATATAGATGG TGGCACCATA TCCCCTCCTA AATTAACAGC TTATATTAGT
TGGCAGCCCG TTGAAGAAGC GAGTATTGGT ATTAACTACA TGTATGTTGG TGACCGTGAC
CGATTTGAGC CGGTTGATGG CGCATATATT GGTTCTCAAG GCCCTATAGA AAATTATAAC
GTTGTGAACC TAACCAGTAG TTATCAACTC AATAATTGGC AGCTCTCATT AGGTGTAGAA
AACTTACTTA ATGAAGATTA TTTTTCTGCT CGCTCACAAG CTTCTACTAA CGCGAGTTAC
TATACTCAAG CACTGGGTAC CACTATCAAT GTAGGTATAA AAGCCAGCTT TTAA
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| Protein sequence | MLFKPSQLAI ATHCALFLLV LPVTHANAES STQATENQTS MERMIITGSR SAERIEEVPS
SVTLIEQQTL AQDMLMTSQL QNLLAFRVPG LAPSTGTSSN SGQNLRGRAA LVMIDGVPQS
TPLRNGKLGI SSIDAGVIER IEVIKGATSI YGNGASGGII NYITKRASED KARVKVGASS
KFSAVKLQDS AGYRVDTSID GTVDNFSYVF SAITEKTGVE RDSEGDAIGL VYGLSETKSN
NYFTKLGYQL DDDKSIQLTY NYYEAQQESD YIDVVGNANT GEKTYSIDNT TGIVKLGVPQ
GPRGNHNLML KYVDQDIFTN TQLTVDGYLQ KIENMFFFST ALANLSEGYE GGQSFIKSEK
KGLRVNFATQ VDWDNVESTF IYGIDALQDI SSQPLEDGRI WVPEMDMRNL AVYLQTKFVI
ADDWVIKAGI RQDSVDLTVD DYQTLKLCRT PSTCSVPFDV TGGELTYNST TYNIGLRYNM
NEFFNPFMSF SQGADISDIG RLLRTATVDD IALIRTESSI VDNYEIGFSG QLGDLNYEIA
AYRSKSELGT SNSFDATTGI YLPVRAPQKI WGYEAQVDYR VLDNLNTGLS YSWVEGKDTE
TDTYIDGGTI SPPKLTAYIS WQPVEEASIG INYMYVGDRD RFEPVDGAYI GSQGPIENYN
VVNLTSSYQL NNWQLSLGVE NLLNEDYFSA RSQASTNASY YTQALGTTIN VGIKASF
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