Gene Sfri_0390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0390 
Symbol 
ID4278230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp419447 
End bp420289 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content43% 
IMG OID638133144 
Producthypothetical protein 
Protein accessionYP_749091 
Protein GI114561578 
COG category[R] General function prediction only 
COG ID[COG0313] Predicted methyltransferases 
TIGRFAM ID[TIGR00096] probable S-adenosylmethionine-dependent methyltransferase, YraL family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.83739 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACCAAA TGGTCGCGCT GTATATTGTT CCCACCCCAA TTGGTAATTT TGGCGACATC 
AGCGCTCGAG CAATAGAGGT GCTGCAACAG GTTGATTTAA TCGCCTGTGA AGACACACGC
CACAGCGGAA GGTTGCTGAG CCACTTTGGT ATTGAAACCC GTAAAACGGC ATTACATGAT
CATAATGAAC GTGATCGAGC GCAATGGATA GTTGAACAAT TAAATGAAGG CAAATCAATC
GCGCTCATTT CTGACGCGGG TACGCCGTTA ATTTCAGACC CTGGCTACCA TTTAGTTAAC
CATGTTCGTC AAGCTGGCCA CAGAGTCGTG CCTTTGCCTG GAGCATGTGC AGCGATAACA
GCCTTAAGTG CATCAGGATT ACCGTCTGAT CGTTTTAGTT TTGAAGGTTT TTTACCCTCA
AAAGAAAAAG CCCGTATCGA TAAACTTGAA TTTCTTAAAG AAGATCCTCG TACTTTGATA
TTTTACGAAT CTCCTCACCG CATACTTTAT AGCCTTGCCG CTATTGTTGA CGTTTTAGGC
GCCGATAGGC AAGTGGTAAT GGCACGTGAA GTCACTAAAA CCTTCGAAAC CTTCTTATCT
GGCACCGCTG CAGAGGTATT AGCGCTGGTT GAAGCTGATG ATAATCAACA AAAAGGCGAA
ATGGTCATTA TGTGCCATGG CTTTACATTA TCTGATGAAG AAGGGATTCC AGCAGTTGCA
GTTGCTACGC TAAAGTTACT TTGTGAAGAA TTACCGCTTA AAAAAGCTGC CGCTATAGCA
GGGCAAATCC ATGGTTTAAA GAAAAATGCC CTATATAAAT ACGGTTTAGA ACTGGATTTA
TAA
 
Protein sequence
MDQMVALYIV PTPIGNFGDI SARAIEVLQQ VDLIACEDTR HSGRLLSHFG IETRKTALHD 
HNERDRAQWI VEQLNEGKSI ALISDAGTPL ISDPGYHLVN HVRQAGHRVV PLPGACAAIT
ALSASGLPSD RFSFEGFLPS KEKARIDKLE FLKEDPRTLI FYESPHRILY SLAAIVDVLG
ADRQVVMARE VTKTFETFLS GTAAEVLALV EADDNQQKGE MVIMCHGFTL SDEEGIPAVA
VATLKLLCEE LPLKKAAAIA GQIHGLKKNA LYKYGLELDL