Gene Sfri_0381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0381 
Symbol 
ID4278797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp411523 
End bp412194 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content41% 
IMG OID638133135 
Productribulose-phosphate 3-epimerase 
Protein accessionYP_749082 
Protein GI114561569 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCCAT TTTTAATTGC ACCATCGATT TTGTCTGCTG ATTTTGCCCG TTTAGGTGAC 
GATGTGAAAG CCGTATTAGA TGCGGGTTCG GATGTTGTTC ATTTTGACGT TATGGATAAT 
CACTACGTAC CAAATTTAAC AATAGGTCCT ATGGTATGCA CCGCGTTGCG CAATTATGGG 
ATCACCGCTG ATATTGATGT GCATTTAATG GTTAAACCCG TTGATCGCAT TATTCCTGAT 
TTTGCCAAAG CCGGTGCTTC AATTATCACT TTTCATCCAG AAGCATCAGA ACATATCGAT 
CGTACACTGC AGTTGATTAA AGAATCTGGC TGTAAGGCCG GATTAGTCTT TAATCCTGGC 
ACACCACTGC ACTATTTAGA TCATGTAATG GACAAGCTCG ATGTTATTTT ATTGATGTCA 
GTTAATCCTG GTTTTGGTGG TCAGTCTTTT ATCCCGCATA CGCTAGAAAA ACTTCGCCAA 
GTTCGCGCGA TTATTGATGC CAGTGGTTTT GATATTCGCT TACAAGTGGA TGGTGGTGTT 
AAGGTCGATA ATATTGCTGA AATAGCGGCT GCGGGTGCAG ATATGTTTGT GGCAGGTTCG 
GCAATTTTCA ATCAACCTGA TTATAAAGTT GTTATTGATC AAATGCGTGC AGAACTCGCT 
TCGATATCAT AA
 
Protein sequence
MRPFLIAPSI LSADFARLGD DVKAVLDAGS DVVHFDVMDN HYVPNLTIGP MVCTALRNYG 
ITADIDVHLM VKPVDRIIPD FAKAGASIIT FHPEASEHID RTLQLIKESG CKAGLVFNPG 
TPLHYLDHVM DKLDVILLMS VNPGFGGQSF IPHTLEKLRQ VRAIIDASGF DIRLQVDGGV 
KVDNIAEIAA AGADMFVAGS AIFNQPDYKV VIDQMRAELA SIS