Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0376 |
Symbol | aroB |
ID | 4278792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 407163 |
End bp | 408239 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638133130 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_749077 |
Protein GI | 114561564 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00801427 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACAAA TTCAGGTTCA ATTAGGTGAT AGAAGTTACC CCATTTATAT TGGCCAGGAT TTGATGAATG ATAGCGAGCT ATTTGCTCGC TACCTAACAA ACAAAAAAGC CTTAATTGTT TCAAATGACA CCATTGCTCC GTTGTATCTT CAACAGATAC AACAAGCGAT GAGCGCTTGC GCGCGCATTG AAACGGTTAT TTTGCCGGAT GGCGAAAAAT TTAAAGACTT ACAACATCTA GATTATATTT TTACTGAGTT ACTTGAGCAT AATTTTGCCC GAGATTCAGT ATTAGTTGCA CTAGGTGGTG GTGTTGTTGG TGATATGACT GGTTTCGCGG CTGCGTGTTA TCAGCGTGGT ATTGAGTTTA TTCAAGTGCC AACTACATTA CTGTCCCAAG TTGATTCTTC TGTTGGTGGT AAAACGGCAG TCAATCATCC GCTTGGGAAA AATATGATTG GTGCATTTTA TCAGCCTAAA TCAGTGATTA TTGATACGTT TTGCTTACAG ACATTACCCG CAAATGAGTT TGCTGCAGGT ATGGCTGAAG TGATTAAGTA CGGTATTATT TGGGATGCTG ACTTTTTTCA GTGGCTTGAA GCAAATGTTG ATGCGTTAAA ATCGCTTCAA ACAGATGCGT TAAACTATGC CATTGCGAAA TGTTGTCAGA TTAAAGCTGA TGTTGTCGCA CAAGATGAAA CGGAACAAGG TGTAAGAGCG TTATTAAACC TTGGGCATAC TTTTGGGCAT GCTATCGAAG CTGAAATGGG CTACGGTGTT TGGTTACATG GCGAAGCTGT CTCTGCTGGT ACTGTTCTTG CGGCTCAAAC AGCATATAAG TTAAATCTAT TAGATGAGCA AAGTGTCGAG CGTATTTGCC GATTGATGCA AGCGTTTGAT TTACCTATAA CGGCTCCAGA GTCGATGGGT TTTGAACAGT TTATCAAGCA TATGCGTCGA GATAAAAAAG TATTAGGTGG TAAAATCCGC TTGGTATTAC CTACAGAAAT AGGCAAAGCT GATGTCTTTA GTGATGTGAG TGAAGACTTA TTGAAACAGG TTATTAGCTG CGTATAA
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Protein sequence | MQQIQVQLGD RSYPIYIGQD LMNDSELFAR YLTNKKALIV SNDTIAPLYL QQIQQAMSAC ARIETVILPD GEKFKDLQHL DYIFTELLEH NFARDSVLVA LGGGVVGDMT GFAAACYQRG IEFIQVPTTL LSQVDSSVGG KTAVNHPLGK NMIGAFYQPK SVIIDTFCLQ TLPANEFAAG MAEVIKYGII WDADFFQWLE ANVDALKSLQ TDALNYAIAK CCQIKADVVA QDETEQGVRA LLNLGHTFGH AIEAEMGYGV WLHGEAVSAG TVLAAQTAYK LNLLDEQSVE RICRLMQAFD LPITAPESMG FEQFIKHMRR DKKVLGGKIR LVLPTEIGKA DVFSDVSEDL LKQVISCV
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