Gene Sfri_0376 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0376 
SymbolaroB 
ID4278792 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp407163 
End bp408239 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content40% 
IMG OID638133130 
Product3-dehydroquinate synthase 
Protein accessionYP_749077 
Protein GI114561564 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00801427 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACAAA TTCAGGTTCA ATTAGGTGAT AGAAGTTACC CCATTTATAT TGGCCAGGAT 
TTGATGAATG ATAGCGAGCT ATTTGCTCGC TACCTAACAA ACAAAAAAGC CTTAATTGTT
TCAAATGACA CCATTGCTCC GTTGTATCTT CAACAGATAC AACAAGCGAT GAGCGCTTGC
GCGCGCATTG AAACGGTTAT TTTGCCGGAT GGCGAAAAAT TTAAAGACTT ACAACATCTA
GATTATATTT TTACTGAGTT ACTTGAGCAT AATTTTGCCC GAGATTCAGT ATTAGTTGCA
CTAGGTGGTG GTGTTGTTGG TGATATGACT GGTTTCGCGG CTGCGTGTTA TCAGCGTGGT
ATTGAGTTTA TTCAAGTGCC AACTACATTA CTGTCCCAAG TTGATTCTTC TGTTGGTGGT
AAAACGGCAG TCAATCATCC GCTTGGGAAA AATATGATTG GTGCATTTTA TCAGCCTAAA
TCAGTGATTA TTGATACGTT TTGCTTACAG ACATTACCCG CAAATGAGTT TGCTGCAGGT
ATGGCTGAAG TGATTAAGTA CGGTATTATT TGGGATGCTG ACTTTTTTCA GTGGCTTGAA
GCAAATGTTG ATGCGTTAAA ATCGCTTCAA ACAGATGCGT TAAACTATGC CATTGCGAAA
TGTTGTCAGA TTAAAGCTGA TGTTGTCGCA CAAGATGAAA CGGAACAAGG TGTAAGAGCG
TTATTAAACC TTGGGCATAC TTTTGGGCAT GCTATCGAAG CTGAAATGGG CTACGGTGTT
TGGTTACATG GCGAAGCTGT CTCTGCTGGT ACTGTTCTTG CGGCTCAAAC AGCATATAAG
TTAAATCTAT TAGATGAGCA AAGTGTCGAG CGTATTTGCC GATTGATGCA AGCGTTTGAT
TTACCTATAA CGGCTCCAGA GTCGATGGGT TTTGAACAGT TTATCAAGCA TATGCGTCGA
GATAAAAAAG TATTAGGTGG TAAAATCCGC TTGGTATTAC CTACAGAAAT AGGCAAAGCT
GATGTCTTTA GTGATGTGAG TGAAGACTTA TTGAAACAGG TTATTAGCTG CGTATAA
 
Protein sequence
MQQIQVQLGD RSYPIYIGQD LMNDSELFAR YLTNKKALIV SNDTIAPLYL QQIQQAMSAC 
ARIETVILPD GEKFKDLQHL DYIFTELLEH NFARDSVLVA LGGGVVGDMT GFAAACYQRG
IEFIQVPTTL LSQVDSSVGG KTAVNHPLGK NMIGAFYQPK SVIIDTFCLQ TLPANEFAAG
MAEVIKYGII WDADFFQWLE ANVDALKSLQ TDALNYAIAK CCQIKADVVA QDETEQGVRA
LLNLGHTFGH AIEAEMGYGV WLHGEAVSAG TVLAAQTAYK LNLLDEQSVE RICRLMQAFD
LPITAPESMG FEQFIKHMRR DKKVLGGKIR LVLPTEIGKA DVFSDVSEDL LKQVISCV