| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0368 |
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| Symbol | |
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| ID | 4278784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 397787 |
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| End bp | 398488 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133122 |
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| Product | nucleotidase |
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| Protein accession | YP_749069 |
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| Protein GI | 114561556 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
[TIGR02254] HAD superfamily (subfamily IA) hydrolase, TIGR02254 |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGAATT TGCTCAATAA ATATAAATGG ATTTTATTTG ATGCCGATGA AACGCTATTT
CATTTCGATG CTTTTTCTGG ATTGAAATTA ATGTTTTCGC GCTTTGAAGT TGATTTTAAT
ATTGATGATT TTACTGTTTA TCAGCAAGTG AATAAACCCT TGTGGATCGA ATACCAAAAC
GGTTTAATTA GTGCTACGCA TTTACAACAT ACCCGCTTCC ATCACTGGGC TAATAAACTG
TCTGTTACTC CGCAACATTT AAACAGTCAG TTTCTTGCTG CAATGGCCGA TATTTGTTTG
CCGTTGCCTG GCGCCCGGGA ACTGATTGAT TCTCTAAGCG GAAAAGTTAA CCTTGGGATT
ATTACCAATG GTTTTACTGA GTTGCAAAAT ATCCGTTTGA GCCGTACTGG CTTTCAAGAT
GCTTTCAATC CGGTGGTAAT CTCTGAACAA CTTGGCAAAG CAAAACCTGA TGTTGCAATT
TTTCATCACG CTTTTAGCTT GATGGGAGAG CCTGAGAGGC ATCAAGTACT TATGGTTGGC
GATAACTTAC ATTCTGATAT ATTAGGCGGT ATCAATGCAG GTATCGACAC TTGTTGGTTA
AATCATCATG GCGAACCCAT AAGTGATGAT ATTTCTCCAA GTTATCAGGT TGGTAATTTA
ACGGAGCTGC ATCAATTACT GATGCCAAAC ACAGTGGTCT AA
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| Protein sequence | MSNLLNKYKW ILFDADETLF HFDAFSGLKL MFSRFEVDFN IDDFTVYQQV NKPLWIEYQN
GLISATHLQH TRFHHWANKL SVTPQHLNSQ FLAAMADICL PLPGARELID SLSGKVNLGI
ITNGFTELQN IRLSRTGFQD AFNPVVISEQ LGKAKPDVAI FHHAFSLMGE PERHQVLMVG
DNLHSDILGG INAGIDTCWL NHHGEPISDD ISPSYQVGNL TELHQLLMPN TVV
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