| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0311 |
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| Symbol | |
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| ID | 4277206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 340562 |
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| End bp | 341248 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133065 |
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| Product | two component transcriptional regulator, winged helix family protein |
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| Protein accession | YP_749012 |
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| Protein GI | 114561499 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00012342 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATCGCA TTTTACTGAT CGACGATGAT ATTGGTTTAT CCGATCTACT CAGCCAATTA
CTTGAGTTGG AAGGCTTCGT ATTAACCCAA GCTTATGATG GTGAGCAAGG GCTGATGATG
GCGCAACAGC AAGACTTCGA TTTAATCCTT CTTGACGTGA TGCTGCCTAA ACTCAATGGT
TTTGAAGTCT TGCGTGCTTT ACGCCAACGC AAGCAAACAC CGATATTAAT GCTAACCGCT
CGCGGTGATG AAATTGATCG GGTTGTCGGC CTTGAAATAG GTGCCGATGA CTATTTGCCA
AAACCCTTTA ATGACCGTGA GTTAGTGGCA CGAATTAGGG CCATATTACG TCGAGCACAA
ACAACTCAGC AAGATAGCCA AGCCAATGAA ATGATGCAGT TTGGTGATTT ACGTCTCGAC
CCTACCCGCC AAGAAACCTA TTGCAATGAG CAACTAATCA TTCTCACTGG CACCGAGTTT
TCACTGCTAT TTCATTTGAT CGAAAAATCA GGCGAACTGG TTACCAAAGA ATCATTAAGC
GAAAACGTAT TAGGCAAAAA GTTAATGCCA TTTGATCGTA GCTTAGATAT GCATTTGTCT
AACTTACGCA AAAAATTACC AGAGCGTCAA GATGGCCGTC CACGCGTCAA AACCCTGCGC
GGCAAAGGTT ATATTTGGAT ACCGTAA
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| Protein sequence | MNRILLIDDD IGLSDLLSQL LELEGFVLTQ AYDGEQGLMM AQQQDFDLIL LDVMLPKLNG
FEVLRALRQR KQTPILMLTA RGDEIDRVVG LEIGADDYLP KPFNDRELVA RIRAILRRAQ
TTQQDSQANE MMQFGDLRLD PTRQETYCNE QLIILTGTEF SLLFHLIEKS GELVTKESLS
ENVLGKKLMP FDRSLDMHLS NLRKKLPERQ DGRPRVKTLR GKGYIWIP
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