Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0278 |
Symbol | |
ID | 4278081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 306788 |
End bp | 307645 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638133032 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_748979 |
Protein GI | 114561466 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000247348 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTTATC AAACGCAATC AATGGCGCTG GCGGTTCCAC ACAATGCTAG TAGCCTAGAA GCGTACATCC AGTCTGTGAC CAGCATCAAT ATGTTGGACG CAGATACAGA GTACGACATC GCCAAGCGTT TACAAGAAAA TGGCGACCTA CAAGCGGCAA AACAATTAAT TATGTCGCAT CTTCGTTTTG TTGTGCATGT TGCAAAAGGT TATTCAGGAT ACGGCTTACC ACAGGCAGAT CTTATTCAAG AAGGTAACAT TGGTTTGATG AAAGCGGTTA AACGCTTCGA CCCAGATGTT GGTGTTCGCC TTGTGTCTTT TGCGGTGCAT TGGATTAAAG CTGAAATTCA TGAATACGTG TTGAAAAACT GGCGTATCGT GAAAGTAGCG ACCACTAAAG CACAGCGTAA ATTATTCTTT AATATTCGTA AGTCTAAAAA GCGTTTAGGT TGGTTTAGTG ACGCTGAAGT GACAATGGTT GCAGAGAATT TAGGTGTATC GAAAGCAGAC GTGACCGAAA TGGAATCACG AATGGCAGCT CAAGATCCGG CCTTCGACTT AACCAATGAC AGCGATGACG ACCATCATGA TTTTGCCCCT GCATTATATT TAGAAGATCA TTCTTCAGAT GTGGCAGATC AGGTTGAACA CGCCAATTGG GAAGCAGACT CTCAAACACG CTTATTATCG GCAATTAAAA CCTTAGACGA ACGTAGTCAG CATATATTAC GTGCGCGTTG GTTAGATGAT ACTAAAGTGA CTTTGCAAGA ACTTGCATCG ACTTATGAAG TCTCTGCTGA GCGAATCAGA CAGCTAGAAA AGAATGCTAT GAACAAGCTT AAATCTTGTA TGGAGTAA
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Protein sequence | MTYQTQSMAL AVPHNASSLE AYIQSVTSIN MLDADTEYDI AKRLQENGDL QAAKQLIMSH LRFVVHVAKG YSGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV LKNWRIVKVA TTKAQRKLFF NIRKSKKRLG WFSDAEVTMV AENLGVSKAD VTEMESRMAA QDPAFDLTND SDDDHHDFAP ALYLEDHSSD VADQVEHANW EADSQTRLLS AIKTLDERSQ HILRARWLDD TKVTLQELAS TYEVSAERIR QLEKNAMNKL KSCME
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